Information for 17-CAARRKTRATWATSAC (Motif 19)

A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C
Reverse Opposite:
A C T G A C G T A T G C C G T A A C G T C G A T C G T A C G A T A G C T C G T A G T C A A G T C A G C T A G C T A C G T A C T G
p-value:1e-11
log p-value:-2.599e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.6 +/- 24.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAARRKTRATWATSAC--
---TAATGATGATCACTA
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T A C G T C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

PH0052.1_Hoxa5/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAARRKTRATWATSAC--
--ACGGTAATTAGCTCAG
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

Hoxd3/MA0912.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAARRKTRATWATSAC--
--ANGNTAATTANCNCAN
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAARRKTRATWATSAC--
--ANGNTAATTANCNCAN
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

Hoxb5/MA0904.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAARRKTRATWATSAC--
--ACGGTAATTAGCTCAT
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAARRKTRATWATSAC--
--ACGGTAATTAGCTCAT
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0049.1_Hoxa2/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAARRKTRATWATSAC--
--AAGGTAATTAGCTCAT
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T

PH0072.1_Hoxc8/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CAARRKTRATWATSAC--
--ACNNTAATTACNNCAN
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

PH0081.1_Pdx1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAARRKTRATWATSAC--
--AAGGTAATTAGCTCAT
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAARRKTRATWATSAC--
----GTTAATTANCTCNN
 A G T C C G T A C T G A C T G A C T A G A C G T A C G T C T G A C G T A A C G T C G T A C G T A A C G T A T C G C G T A G T A C A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A