Information for 13-AATTRGCTKTTCTCCW (Motif 13)

C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
Reverse Opposite:
C G T A C T A G A C T G C T G A C A T G C G T A G T C A G T C A C G T A C T A G T G A C G A T C C G T A G T C A C G A T C G A T
p-value:1e-12
log p-value:-2.787e+01
Information Content per bp:1.728
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.2 +/- 21.8bp
Average Position of motif in Background34.0 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0005.1_Barhl1/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AATTRGCTKTTCTCCW
GNNTTAATTGGTTGTT-----
 A C G T A C G T A C G T A C G T A C G T C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AATTRGCTKTTCTCCW
NNNTTAATTGGTTTTN-----
 A C G T A C G T A C G T A C G T A C G T C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G A C G T A C G T A C G T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----AATTRGCTKTTCTCCW
NNNTTAATTGGTTTTT-----
 A C G T A C G T A C G T A C G T A C G T C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T A C G T A C G T A C G T A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AATTRGCTKTTCTCCW
TNTTATCTTATCTT--
 C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
A C G T T A C G A G C T C G A T C T G A A C G T A G T C A G C T A C G T C T G A A C G T T A G C G C A T G A C T A C G T A C G T

PH0094.1_Lhx4/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AATTRGCTKTTCTCCW
TAAACTAATTAGCTTTG-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G A C G T A C G T A C G T A C G T A C G T

PH0074.1_Hoxd1/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AATTRGCTKTTCTCCW
TAAACTAATTAGCTGTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A A C G T A C G T A C G T A C G T A C G T

PH0155.1_Prrx2/Jaspar

Match Rank:7
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------AATTRGCTKTTCTCCW
NTTCGCTAATTAGCTNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0007.1_Barx1/Jaspar

Match Rank:8
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------AATTRGCTKTTCTCCW
ATNNACTAATTACTTT-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
C G T A G C A T C A G T G A T C T C G A T A G C G A C T T G C A G T C A A C G T A C G T C T G A A T G C A G C T C A G T C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AATTRGCTKTTCTCCW---
-----TTTTTTTTCNNGTN
 C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

PH0024.1_Dlx5/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AATTRGCTKTTCTCCW
GGGGTAATTAGCTCTG-----
 A C G T A C G T A C G T A C G T A C G T C G T A G C T A A C G T A C G T C T A G A C T G G A T C A C G T A C G T A C G T G C A T G A T C A G C T A G T C A G T C G C A T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G A C G T A C G T A C G T A C G T A C G T