Information for 4-TGGGAAHTGTAGTCCC (Motif 3)

A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
Reverse Opposite:
C T A G C T A G T A C G C G T A A T G C A C G T C T G A A T G C T C G A C T G A A G C T A G C T A G T C A G T C A G T C T C G A
p-value:1e-19
log p-value:-4.428e+01
Information Content per bp:1.681
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif3.92%
Number of Background Sequences with motif234.6
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets52.8 +/- 26.9bp
Average Position of motif in Background46.0 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:TGGGAAHTGTAGTCCC
-GGGAATTGTAGT---
 A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:2
Score:0.86
Offset:-6
Orientation:reverse strand
Alignment:------TGGGAAHTGTAGTCCC
GCMTBCTGGGAGTTGTAGTY--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C A C G T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:3
Score:0.84
Offset:-6
Orientation:reverse strand
Alignment:------TGGGAAHTGTAGTCCC
GCATTCTGGGAATTGTAGTT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGGAAHTGTAGTCCC
CSTGGGAAAD--------
 A C G T A C G T A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGGGAAHTGTAGTCCC
----NNHTGTGGTTWN
 A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
A C G T A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TGGGAAHTGTAGTCCC
------CTGTGGTTTN
 A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TGGGAAHTGTAGTCCC
-----GCTGTGGTTT-
 A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
A C G T A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------TGGGAAHTGTAGTCCC
RGSMTBCTGGGAAAT--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGGGAAHTGTAGTCCC-
-GNNATTTGTCGTAANN
 A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C A C G T
A C G T T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

PB0117.1_Eomes_2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGGGAAHTGTAGTCCC
GCGGAGGTGTCGCCTC
 A G C T A C T G C T A G C T A G T C G A T C G A G A C T A C G T A T C G A G C T T G C A A T C G A C G T A G T C G A T C G A T C
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C