Information for 3-ACAGCAGGTG (Motif 4)

G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G
Reverse Opposite:
T A G C G T C A A G T C G T A C G A C T T A C G A G T C C G A T C A T G C A G T
p-value:1e-12
log p-value:-2.909e+01
Information Content per bp:1.650
Number of Target Sequences with motif152.0
Percentage of Target Sequences with motif18.20%
Number of Background Sequences with motif4778.1
Percentage of Background Sequences with motif9.91%
Average Position of motif in Targets49.2 +/- 26.2bp
Average Position of motif in Background49.2 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-ACAGCAGGTG-
CACAGCAGGGGG
 A C G T G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:ACAGCAGGTG---
-SDGCAGGTGCNS
 G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T A C G T A C G T
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCAGGTG---
DCHCAGCAGGRGGCC
 A C G T A C G T G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGTG-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGTG-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGTG-
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCAGGTG
DCTCAGCAGG--
 A C G T A C G T G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.76
Offset:2
Orientation:forward strand
Alignment:ACAGCAGGTG-
--AACAGGTGT
 G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T
A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:ACAGCAGGTG--
--NNCAGGTGNN
 G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T A C G T
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

TCF3/MA0522.2/Jaspar

Match Rank:10
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:ACAGCAGGTG--
--NNCAGGTGTN
 G T C A G T A C G C T A T C A G A T G C C T G A C A T G T C A G C A G T A T C G A C G T A C G T
A C G T A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T