Information for 5-CAATGGGCTC (Motif 15)

A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
Reverse Opposite:
A T C G G T C A A C T G T A G C A G T C T A G C C G T A G C A T G C A T T A C G
p-value:1e-10
log p-value:-2.354e+01
Information Content per bp:1.746
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.79%
Number of Background Sequences with motif681.9
Percentage of Background Sequences with motif1.42%
Average Position of motif in Targets49.8 +/- 20.6bp
Average Position of motif in Background50.1 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------CAATGGGCTC-
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CAATGGGCTC
VRAACAATGG----
 A C G T A C G T A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAATGGGCTC
GAACAATGG----
 A C G T A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAATGGGCTC
GAACAATGGN---
 A C G T A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAATGGGCTC
AACAAAGG----
 A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAATGGGCTC
GTTAATGGCC--
 A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAATGGGCTC
RACAAWGG----
 A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAATGGGCTC
AGCCAATCGG---
 A C G T A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAATGGGCTC
RAACAATGGN---
 A C G T A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAATGGGCTC-----
TATTATGGGATGGATAA
 A C G T A C G T A T G C C G T A C G T A C G A T A T C G C T A G A T C G A G T C C A G T T A G C A C G T A C G T A C G T A C G T A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A