Information for 5-CACAGCTTGGACY (Motif 12)

A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T
Reverse Opposite:
C T G A A C T G A C G T A G T C A G T C G T C A G T C A A C T G A G T C A C G T A C T G A C G T A T C G
p-value:1e-8
log p-value:-1.955e+01
Information Content per bp:1.839
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif20.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets69.5 +/- 20.2bp
Average Position of motif in Background32.2 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CACAGCTTGGACY
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CACAGCTTGGACY
CACAGN-------
 A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCTTGGACY
DCTCAGCAGG----
 A C G T A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CACAGCTTGGACY
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CACAGCTTGGACY
NAACAGCTGG----
 A C G T A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CACAGCTTGGACY
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCTTGGACY-
DCHCAGCAGGRGGCC
 A C G T A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACAGCTTGGACY-
AGNACAGNCTGTTCTN
 A C G T A C G T A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CACAGCTTGGACY-
GVACAGNMTGTYCTB
 A C G T A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CACAGCTTGGACY
CACAGCAGGGGG-
 A T G C C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C T G T A C G T C G A A G T C A G C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T