Information for 6-GACCTGACTG (Motif 11)

C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C G T A T G C C G T A A C T G A T C G A G C T A G T C
p-value:1e-8
log p-value:-1.892e+01
Information Content per bp:1.863
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif3.47%
Number of Background Sequences with motif96.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets54.2 +/- 23.0bp
Average Position of motif in Background44.4 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GACCTGACTG-
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GACCTGACTG-
---CTGTCTGG
 C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GACCTGACTG
NNACTTGCCTT
 A C G T C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GACCTGACTG
-NCGTGACN-
 C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G
A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GACCTGACTG-
---TTGATTGN
 C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G A C G T
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GACCTGACTG-----
---BTGABTGACAGS
 C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GACCTGACTG
TGACCTYA---
 A C G T C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GACCTGACTG-
-VBSYGTCTGG
 C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GACCTGACTG------
NNTNNTGTCTGGNNTNG
 A C G T C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GACCTGACTG
--CATGAC--
 C T A G C T G A A T G C G T A C A C G T A T C G T G C A A G T C A C G T A C T G
A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T