Information for 18-GCCTTTAAGG (Motif 28)

T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G
Reverse Opposite:
G T A C A G T C A C G T A G C T T G C A C T G A C G T A A C T G A C T G A G T C
p-value:1e-6
log p-value:-1.548e+01
Information Content per bp:1.841
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif89.1
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets45.6 +/- 29.2bp
Average Position of motif in Background49.2 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCTTTAAGG--
TGCCCTGAGGGCA
 A C G T T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G A C G T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCTTTAAGG
GGCCATTAAC-
 A C G T T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCCTTTAAGG-
-CCTTTGAWGT
 T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCTTTAAGG--
CCTTTTATAGNC
 T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCCTTTAAGG---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCCTTTAAGG---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTTAAGG---
NGCTTTCTAGGAAN
 A C G T T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G A C G T A C G T A C G T
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTTAAGG
NNCAATTANN-
 A C G T T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCCTTTAAGG
BCMATTAG--
 T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCTTTAAGG
NGCAATTAAA-
 A C G T T C A G A G T C G T A C C G A T A G C T A C G T T C G A C G T A A C T G A C T G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T