Information for 2-TCAGCACCGCGGACAG (Motif 2)

A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G T C A G T C C T A G A G T C A C T G A C T G A C G T T C A G A G T C A C G T A C T G T C G A
p-value:1e-39
log p-value:-9.008e+01
Information Content per bp:1.881
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.1 +/- 18.3bp
Average Position of motif in Background62.8 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-TCAGCACCGCGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TCAGCACCGCGGACAG----
TCAGCACCATGGACAGCTCC
 A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TCAGCACCGCGGACAG
------CCAGGAACAG
 A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----TCAGCACCGCGGACAG
TGAGTCAGCA----------
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:5
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:TCAGCACCGCGGACAG--
------NCGCGGACGTTG
 A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----TCAGCACCGCGGACAG
SCTGTCARCACC--------
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.49
Offset:9
Orientation:forward strand
Alignment:TCAGCACCGCGGACAG
---------TTGACAG
 A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-TCAGCACCGCGGACAG
GTCAGCANNTN------
 A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.49
Offset:6
Orientation:forward strand
Alignment:TCAGCACCGCGGACAG
------CAAAGGTCAG
 A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.48
Offset:9
Orientation:forward strand
Alignment:TCAGCACCGCGGACAG-
---------TTGACAGC
 A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C T C A G G A T C A C T G A C T G C G T A A G T C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C