Information for 11-CCCTACACGT (Motif 18)

A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T
Reverse Opposite:
G T C A A G T C A C T G A C G T A C T G G A C T C T G A A C T G A C T G A C T G
p-value:1e-9
log p-value:-2.146e+01
Information Content per bp:1.859
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif40.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.7 +/- 24.6bp
Average Position of motif in Background46.1 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt/MA0004.1/Jaspar

Match Rank:1
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CCCTACACGT-
-----CACGTG
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G

Mlxip/MA0622.1/Jaspar

Match Rank:2
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CCCTACACGT--
----ACACGTGC
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C

Npas2/MA0626.1/Jaspar

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CCCTACACGT---
---NACACGTGCN
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CCCTACACGT--
----GCACGTNC
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CCCTACACGT--
----GCACGTAY
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CCCTACACGT-
---NVCACGTG
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T
A C G T A C G T A C G T C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G

CLOCK/MA0819.1/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CCCTACACGT---
---AACACGTGTT
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCCTACACGT----
----GCACGTACCC
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CCCTACACGT---
-----CACGTGDC
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C

Creb3l2/MA0608.1/Jaspar

Match Rank:10
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CCCTACACGT---
----ACACGTGGC
 A G T C T A G C A G T C G A C T C G T A A G T C C G T A A G T C C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C