Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-111 | -2.558e+02 | 0.0000 | 235.0 | 29.16% | 2226.9 | 4.87% | motif file (matrix) |
svg |
2 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-102 | -2.364e+02 | 0.0000 | 212.0 | 26.30% | 1922.8 | 4.20% | motif file (matrix) |
svg |
3 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-102 | -2.351e+02 | 0.0000 | 318.0 | 39.45% | 4777.5 | 10.44% | motif file (matrix) |
svg |
4 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-101 | -2.335e+02 | 0.0000 | 330.0 | 40.94% | 5191.0 | 11.34% | motif file (matrix) |
svg |
5 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-86 | -1.983e+02 | 0.0000 | 185.0 | 22.95% | 1737.8 | 3.80% | motif file (matrix) |
svg |
6 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-82 | -1.889e+02 | 0.0000 | 234.0 | 29.03% | 3081.6 | 6.73% | motif file (matrix) |
svg |
7 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-80 | -1.855e+02 | 0.0000 | 170.0 | 21.09% | 1549.4 | 3.39% | motif file (matrix) |
svg |
8 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-78 | -1.817e+02 | 0.0000 | 160.0 | 19.85% | 1378.6 | 3.01% | motif file (matrix) |
svg |
9 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-77 | -1.774e+02 | 0.0000 | 173.0 | 21.46% | 1703.7 | 3.72% | motif file (matrix) |
svg |
10 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-58 | -1.341e+02 | 0.0000 | 105.0 | 13.03% | 753.7 | 1.65% | motif file (matrix) |
svg |
11 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-52 | -1.210e+02 | 0.0000 | 115.0 | 14.27% | 1070.7 | 2.34% | motif file (matrix) |
svg |
12 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-45 | -1.042e+02 | 0.0000 | 59.0 | 7.32% | 246.2 | 0.54% | motif file (matrix) |
svg |
13 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-32 | -7.400e+01 | 0.0000 | 128.0 | 15.88% | 2156.0 | 4.71% | motif file (matrix) |
svg |
14 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-30 | -7.043e+01 | 0.0000 | 58.0 | 7.20% | 444.8 | 0.97% | motif file (matrix) |
svg |
15 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-25 | -5.787e+01 | 0.0000 | 40.0 | 4.96% | 238.6 | 0.52% | motif file (matrix) |
svg |
16 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-24 | -5.586e+01 | 0.0000 | 37.0 | 4.59% | 206.8 | 0.45% | motif file (matrix) |
svg |
17 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-21 | -5.020e+01 | 0.0000 | 36.0 | 4.47% | 228.2 | 0.50% | motif file (matrix) |
svg |
18 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-17 | -4.133e+01 | 0.0000 | 252.0 | 31.27% | 8422.5 | 18.41% | motif file (matrix) |
svg |
19 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-17 | -4.060e+01 | 0.0000 | 202.0 | 25.06% | 6207.8 | 13.57% | motif file (matrix) |
svg |
20 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-16 | -3.748e+01 | 0.0000 | 27.0 | 3.35% | 175.4 | 0.38% | motif file (matrix) |
svg |
21 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-15 | -3.677e+01 | 0.0000 | 42.0 | 5.21% | 484.5 | 1.06% | motif file (matrix) |
svg |
22 |
| E-box(bHLH)/Promoter/Homer | 1e-14 | -3.359e+01 | 0.0000 | 29.0 | 3.60% | 244.0 | 0.53% | motif file (matrix) |
svg |
23 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-12 | -2.987e+01 | 0.0000 | 137.0 | 17.00% | 4025.4 | 8.80% | motif file (matrix) |
svg |
24 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-10 | -2.362e+01 | 0.0000 | 41.0 | 5.09% | 698.1 | 1.53% | motif file (matrix) |
svg |
25 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-9 | -2.164e+01 | 0.0000 | 69.0 | 8.56% | 1716.7 | 3.75% | motif file (matrix) |
svg |
26 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.719e+01 | 0.0000 | 59.0 | 7.32% | 1531.5 | 3.35% | motif file (matrix) |
svg |
27 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-6 | -1.567e+01 | 0.0000 | 23.0 | 2.85% | 353.8 | 0.77% | motif file (matrix) |
svg |
28 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-6 | -1.501e+01 | 0.0000 | 14.0 | 1.74% | 139.3 | 0.30% | motif file (matrix) |
svg |
29 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-6 | -1.420e+01 | 0.0000 | 75.0 | 9.31% | 2339.9 | 5.11% | motif file (matrix) |
svg |
30 |
| E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-5 | -1.377e+01 | 0.0000 | 31.0 | 3.85% | 650.6 | 1.42% | motif file (matrix) |
svg |
31 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.208e+01 | 0.0001 | 19.0 | 2.36% | 316.9 | 0.69% | motif file (matrix) |
svg |
32 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-5 | -1.199e+01 | 0.0001 | 57.0 | 7.07% | 1721.1 | 3.76% | motif file (matrix) |
svg |
33 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.173e+01 | 0.0001 | 27.0 | 3.35% | 581.2 | 1.27% | motif file (matrix) |
svg |
34 |
| E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.136e+01 | 0.0001 | 50.0 | 6.20% | 1470.4 | 3.21% | motif file (matrix) |
svg |
35 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-4 | -1.069e+01 | 0.0002 | 17.0 | 2.11% | 289.2 | 0.63% | motif file (matrix) |
svg |
36 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-4 | -1.049e+01 | 0.0003 | 47.0 | 5.83% | 1397.8 | 3.05% | motif file (matrix) |
svg |
37 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-4 | -9.859e+00 | 0.0005 | 5.0 | 0.62% | 22.2 | 0.05% | motif file (matrix) |
svg |
38 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-4 | -9.842e+00 | 0.0005 | 24.0 | 2.98% | 542.3 | 1.19% | motif file (matrix) |
svg |
39 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-4 | -9.265e+00 | 0.0009 | 123.0 | 15.26% | 4989.3 | 10.90% | motif file (matrix) |
svg |
40 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-4 | -9.252e+00 | 0.0009 | 52.0 | 6.45% | 1686.2 | 3.69% | motif file (matrix) |
svg |
41 |
| CRE(bZIP)/Promoter/Homer | 1e-3 | -8.733e+00 | 0.0014 | 24.0 | 2.98% | 584.5 | 1.28% | motif file (matrix) |
svg |
42 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-3 | -8.702e+00 | 0.0014 | 35.0 | 4.34% | 1010.2 | 2.21% | motif file (matrix) |
svg |
43 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-3 | -8.474e+00 | 0.0018 | 33.0 | 4.09% | 942.7 | 2.06% | motif file (matrix) |
svg |
44 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.113e+00 | 0.0025 | 45.0 | 5.58% | 1464.4 | 3.20% | motif file (matrix) |
svg |
45 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.033e+00 | 0.0026 | 107.0 | 13.28% | 4356.2 | 9.52% | motif file (matrix) |
svg |
46 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-3 | -7.608e+00 | 0.0039 | 80.0 | 9.93% | 3103.9 | 6.78% | motif file (matrix) |
svg |
47 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-3 | -7.562e+00 | 0.0040 | 94.0 | 11.66% | 3780.7 | 8.26% | motif file (matrix) |
svg |
48 |
| E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-3 | -7.386e+00 | 0.0047 | 15.0 | 1.86% | 315.5 | 0.69% | motif file (matrix) |
svg |
49 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-3 | -7.210e+00 | 0.0055 | 32.0 | 3.97% | 974.0 | 2.13% | motif file (matrix) |
svg |
50 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.198e+00 | 0.0055 | 41.0 | 5.09% | 1356.7 | 2.96% | motif file (matrix) |
svg |
51 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-3 | -7.057e+00 | 0.0061 | 68.0 | 8.44% | 2594.5 | 5.67% | motif file (matrix) |
svg |
52 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-2 | -6.679e+00 | 0.0088 | 31.0 | 3.85% | 964.3 | 2.11% | motif file (matrix) |
svg |
53 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -6.497e+00 | 0.0104 | 15.0 | 1.86% | 345.5 | 0.76% | motif file (matrix) |
svg |
54 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -6.460e+00 | 0.0105 | 29.0 | 3.60% | 894.0 | 1.95% | motif file (matrix) |
svg |
55 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.313e+00 | 0.0120 | 46.0 | 5.71% | 1648.4 | 3.60% | motif file (matrix) |
svg |
56 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-2 | -6.277e+00 | 0.0122 | 31.0 | 3.85% | 990.2 | 2.16% | motif file (matrix) |
svg |
57 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.236e+00 | 0.0125 | 74.0 | 9.18% | 2970.4 | 6.49% | motif file (matrix) |
svg |
58 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -6.228e+00 | 0.0125 | 33.0 | 4.09% | 1079.4 | 2.36% | motif file (matrix) |
svg |
59 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-2 | -6.209e+00 | 0.0125 | 65.0 | 8.06% | 2542.5 | 5.56% | motif file (matrix) |
svg |
60 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -6.166e+00 | 0.0127 | 19.0 | 2.36% | 507.3 | 1.11% | motif file (matrix) |
svg |
61 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-2 | -6.127e+00 | 0.0130 | 86.0 | 10.67% | 3568.5 | 7.80% | motif file (matrix) |
svg |
62 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -6.099e+00 | 0.0132 | 170.0 | 21.09% | 7854.2 | 17.16% | motif file (matrix) |
svg |
63 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-2 | -6.003e+00 | 0.0143 | 52.0 | 6.45% | 1952.2 | 4.27% | motif file (matrix) |
svg |
64 |
| NFY(CCAAT)/Promoter/Homer | 1e-2 | -5.815e+00 | 0.0170 | 44.0 | 5.46% | 1601.4 | 3.50% | motif file (matrix) |
svg |
65 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.727e+00 | 0.0182 | 108.0 | 13.40% | 4723.1 | 10.32% | motif file (matrix) |
svg |
66 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.683e+00 | 0.0188 | 44.0 | 5.46% | 1613.3 | 3.53% | motif file (matrix) |
svg |
67 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.555e+00 | 0.0210 | 48.0 | 5.96% | 1810.8 | 3.96% | motif file (matrix) |
svg |
68 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-2 | -5.538e+00 | 0.0211 | 41.0 | 5.09% | 1489.7 | 3.26% | motif file (matrix) |
svg |
69 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-2 | -5.424e+00 | 0.0233 | 14.0 | 1.74% | 351.0 | 0.77% | motif file (matrix) |
svg |
70 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-2 | -5.332e+00 | 0.0251 | 17.0 | 2.11% | 470.0 | 1.03% | motif file (matrix) |
svg |
71 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-2 | -5.236e+00 | 0.0273 | 54.0 | 6.70% | 2126.5 | 4.65% | motif file (matrix) |
svg |
72 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -5.198e+00 | 0.0279 | 90.0 | 11.17% | 3897.7 | 8.52% | motif file (matrix) |
svg |
73 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.032e+00 | 0.0326 | 28.0 | 3.47% | 948.5 | 2.07% | motif file (matrix) |
svg |
74 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.897e+00 | 0.0367 | 75.0 | 9.31% | 3192.2 | 6.98% | motif file (matrix) |
svg |
75 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-2 | -4.878e+00 | 0.0370 | 72.0 | 8.93% | 3046.5 | 6.66% | motif file (matrix) |
svg |
76 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-2 | -4.676e+00 | 0.0446 | 68.0 | 8.44% | 2876.4 | 6.29% | motif file (matrix) |
svg |
77 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.642e+00 | 0.0455 | 37.0 | 4.59% | 1388.9 | 3.04% | motif file (matrix) |
svg |