Information for 17-CAAACCCCATTGTTTA (Motif 28)

A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A C T G A A T G C C G T A C G T A A C G T A C T G C T A G A C T G A C T G A C G T A G C T A C G T C T A G
p-value:1e-8
log p-value:-1.993e+01
Information Content per bp:1.909
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 21.3bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAAACCCCATTGTTTA--
-TGTTCCCATTGTGTACT
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C G T A C G T
A C G T C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.67
Offset:6
Orientation:forward strand
Alignment:CAAACCCCATTGTTTA
------CCATTGTTC-
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.67
Offset:6
Orientation:forward strand
Alignment:CAAACCCCATTGTTTA
------CCATTGTTYB
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CAAACCCCATTGTTTA
-----NCCATTGTTY-
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CAAACCCCATTGTTTA
-----NCCATTGTTC-
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:6
Score:0.66
Offset:7
Orientation:forward strand
Alignment:CAAACCCCATTGTTTA--
-------TATTGTTTATT
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.65
Offset:8
Orientation:reverse strand
Alignment:CAAACCCCATTGTTTA-
--------ATTGTTTAN
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CAAACCCCATTGTTTA--
--ANNTCCATTGTTCNNN
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C G T A C G T
A C G T A C G T C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAAACCCCATTGTTTA--
---NNNCCATTGTGTNAN
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Foxj2/MA0614.1/Jaspar

Match Rank:10
Score:0.63
Offset:9
Orientation:reverse strand
Alignment:CAAACCCCATTGTTTA-
---------TTGTTTAC
 A G T C C G T A C T G A G T C A A G T C A G T C A G T C A G T C C G T A A C G T A C G T A T C G A G C T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C