Information for 6-CACAGGAGGG (Motif 14)

A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G
Reverse Opposite:
A G T C A G T C G T A C G C A T A T G C A T G C C G A T A T C G C A G T T A C G
p-value:1e-6
log p-value:-1.400e+01
Information Content per bp:1.667
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif16.00%
Number of Background Sequences with motif477.2
Percentage of Background Sequences with motif8.09%
Average Position of motif in Targets49.6 +/- 27.0bp
Average Position of motif in Background51.1 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CACAGGAGGG--
CACAGCAGGGGG
 A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CACAGGAGGG----
DCHCAGCAGGRGGCC
 A C G T A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CACAGGAGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CACAGGAGGG--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CACAGGAGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CACAGGAGGG
DCTCAGCAGG-
 A C G T A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CACAGGAGGG
CACAGN----
 A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CACAGGAGGG
AACAGGAAGT
 A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CACAGGAGGG----
CACAGCGGGGGGTC
 A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G A C G T A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CACAGGAGGG-
--CAGGTGAGG
 A T G C G T C A A T G C G C T A T A C G T A C G C G T A C A T G T C A G T C A G A C G T
A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G