Information for 6-CAGGCACTTA (Motif 17)

A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A
Reverse Opposite:
C G A T T C G A C G T A C T A G A C G T A C T G G T A C A G T C A C G T C T A G
p-value:1e-9
log p-value:-2.260e+01
Information Content per bp:1.858
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets65.6 +/- 25.2bp
Average Position of motif in Background53.8 +/- 37.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CAGGCACTTA-
-AAGCACTTAA
 A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

ISL2/MA0914.1/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CAGGCACTTA-
---GCACTTAA
 A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CAGGCACTTA-
--ACCACTTAA
 A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T
A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CAGGCACTTA-
--ACCACTTAA
 A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T
A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAGGCACTTA-
-MRSCACTYAA
 A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGGCACTTA-----
CATAACCACTTAACAAC
 A C G T A C G T A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGGCACTTA-
-AASCACTCAA
 A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGGCACTTA-----
TAAGCCACTTAACATT
 A C G T A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGGCACTTA-----
CTTAACCACTTAAGGAT
 A C G T A C G T A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CAGGCACTTA-
---BCMATTAG
 A G T C C G T A A C T G A C T G A G T C G T C A A G T C C G A T A C G T C G T A A C G T
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G