Information for 3-GGCAGAAAAWASAGAS (Motif 11)

A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
Reverse Opposite:
A T C G A C G T A G T C A C G T A T C G A C G T C G A T C A G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C
p-value:1e-10
log p-value:-2.517e+01
Information Content per bp:1.890
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.6 +/- 23.3bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGAAAAWASAGAS
TGCCAAAATAAACANN-
 A C G T A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGCAGAAAAWASAGAS
CGAAGCACACAAAATA---
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

PB0186.1_Tcf3_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGCAGAAAAWASAGAS
AGCCGAAAAAAAAAT-
 A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGCAGAAAAWASAGAS
NACAGGAAAT------
 A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCAGAAAAWASAGAS
TACTGGAAAAAAAA---
 A C G T A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGCAGAAAAWASAGAS
CAATTGCAAAAATAT-----
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GGCAGAAAAWASAGAS
-GCTAAAAATAGC---
 A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GGCAGAAAAWASAGAS
---AGATAAGA-----
 A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GGCAGAAAAWASAGAS
--CCAAAAATAG----
 A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GGCAGAAAAWASAGAS
GTCATAAAAN------
 A C T G A C T G A G T C C G T A C T A G C G T A G T C A C G T A G C T A C G T A C G T A A T G C C G T A C T A G G T C A T A C G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T