Information for 8-AGAGGACAAAAGG (Motif 9)

C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G
Reverse Opposite:
A T G C A T G C C A G T A C G T A C G T A C G T A C T G A C G T A G T C T A G C A G C T A G T C A G C T
p-value:1e-10
log p-value:-2.443e+01
Information Content per bp:1.797
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif55.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets43.1 +/- 21.5bp
Average Position of motif in Background54.1 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAAAAGG-
ARGAGGMCAAAATGW
 A C G T C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGAGGACAAAAGG
--AAAACAAAGG-
 C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Rarb/MA0857.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGAGGACAAAAGG---
AAAGGTCAAAAGGTCA
 C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G A C G T A C G T A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

RARA/MA0729.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGAGGACAAAAGG------
-GAGGTCAAAAGGTCAATG
 C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

Rarg/MA0859.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGAGGACAAAAGG----
-AAGGTCAAAAGGTCAA
 C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G A C G T A C G T A C G T A C G T
A C G T T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGAGGACAAAAGG---
-GAGGTCAAAAGGTCA
 C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G A C G T A C G T A C G T
A C G T T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAAAAGG---
AGAAGAACAAAGGACTA
 A C G T C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AGAGGACAAAAGG
----RACAAWGG-
 C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGAGGACAAAAGG
AAAAATAACAAACGG
 A C G T A C G T C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGAGGACAAAAGG
--RNAACAATGG-
 C T G A C T A G C T G A A C T G C T A G G T C A G T A C C G T A G T C A C G T A G C T A T A C G A T C G
A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T