Information for 5-ARTTMAAWRCAGG (Motif 4)

C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C C G A T A C T G A G C T C G A T A C G T A G C T A C G T C G T A G T C A A G C T A C G T
p-value:1e-16
log p-value:-3.712e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.6 +/- 21.7bp
Average Position of motif in Background73.1 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ARTTMAAWRCAGG
AATCAATTCAATAATT-
 A C G T A C G T A C G T A C G T C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ARTTMAAWRCAGG
NATTCAAAT----
 C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ARTTMAAWRCAGG
GCAATAAAAA-----
 A C G T A C G T C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ARTTMAAWRCAGG
ACATCAAAGG---
 C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ARTTMAAWRCAGG---
YTAATTRAWWCCAGATGT
 A C G T A C G T C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

PH0038.1_Hlx/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ARTTMAAWRCAGG
CCATAATTAATTACA--
 A C G T A C G T A C G T A C G T C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A A C G T A C G T

PH0101.1_Lmx1b/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------ARTTMAAWRCAGG
NNAATTAATTAAAAANN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T A C G T A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------ARTTMAAWRCAGG
CGAATTAATTAAAAACC--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----ARTTMAAWRCAGG
TAGGTAATAAAATTCA--
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A A C G T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------ARTTMAAWRCAGG
CGAATTAATTAAATACT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C G T A C G T G T C A C T G A C G T A C G T A C T G A A G T C C G T A A C T G A C T G
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T A C G T A C G T