Information for 2-KGGARCTKTSCMTGGK (Motif 6)

A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
Reverse Opposite:
G T C A A G T C A G T C G T C A C A G T A C T G A T C G C G T A T G A C C G T A A C T G A G T C C G A T A G T C A G T C G T A C
p-value:1e-11
log p-value:-2.601e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets29.7 +/- 19.3bp
Average Position of motif in Background49.1 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:KGGARCTKTSCMTGGK-----
-GGAGCTGTCCATGGTGCTGA
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:KGGARCTKTSCMTGGK------
-GGCGCTGTCCATGGTGCTGAA
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:KGGARCTKTSCMTGGK
-----CTGTTCCTGG-
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:KGGARCTKTSCMTGGK
CGGAGC----------
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----KGGARCTKTSCMTGGK
GAGCCTGGTACTGWGCCTGR-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:KGGARCTKTSCMTGGK
-TGACCTTTNCNT---
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:KGGARCTKTSCMTGGK
-GGGAATTTCC-----
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:KGGARCTKTSCMTGGK
-GGGGATTTCC-----
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:KGGARCTKTSCMTGGK
-GGGGATTTCC-----
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:KGGARCTKTSCMTGGK
-GGGAATTTCC-----
 A C T G C T A G A C T G C G T A C T A G A G T C A C G T A C T G A C G T A T G C A G T C G T C A A C G T A C T G A C T G A C G T
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T A C G T