Information for 4-CCACGGAGCCAGGCMG (Motif 5)

G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
Reverse Opposite:
A G T C C A G T T A C G A T G C A G T C A C G T A C T G C T A G A G T C C G A T A T G C A G T C C T A G A C G T A C T G A C T G
p-value:1e-15
log p-value:-3.674e+01
Information Content per bp:1.782
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.3 +/- 31.0bp
Average Position of motif in Background48.0 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCACGGAGCCAGGCMG
---CGGAGC-------
 G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCACGGAGCCAGGCMG
-CACGCA---------
 G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCACGGAGCCAGGCMG
AGCTCGGCGCCAAAAGC
 A C G T G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCACGGAGCCAGGCMG
----CGTGCCAAG---
 G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCACGGAGCCAGGCMG
CCTTCGGCGCCAAAAGG
 A C G T G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCACGGAGCCAGGCMG
TGGCAGNCTGCCAG----
 A C G T A C G T G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCACGGAGCCAGGCMG
TTGGCANNNTGCCAAG---
 A C G T A C G T A C G T G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCACGGAGCCAGGCMG
TBGCACGCAA--------
 A C G T A C G T G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CCACGGAGCCAGGCMG---
----SCAGYCADGCATGAC
 G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CCACGGAGCCAGGCMG
------TGCCAA----
 G T A C A G T C C G T A G A T C A C T G A T C G C G T A A C T G A G T C A G T C G T C A C T A G A T C G A G T C G T C A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T