Information for 15-GARCCGGGCAGGA (Motif 23)

A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A
Reverse Opposite:
A C G T A G T C A G T C A C G T A C T G A G T C A G T C G A T C A C T G A C T G A G T C A C G T G T A C
p-value:1e-5
log p-value:-1.280e+01
Information Content per bp:1.860
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif21.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets45.1 +/- 26.6bp
Average Position of motif in Background46.1 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GARCCGGGCAGGA--
CAAATCCAGACATCACA
 A C G T A C G T A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GARCCGGGCAGGA-
----CWGGCGGGAA
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A A C G T
A C G T A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GARCCGGGCAGGA
---CCAGACAG--
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GARCCGGGCAGGA
--TNNGGGCAG--
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:5
Score:0.55
Offset:7
Orientation:forward strand
Alignment:GARCCGGGCAGGA----
-------ACAGGAAGTG
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

E2F6/MA0471.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GARCCGGGCAGGA---
-----GGGCGGGAAGG
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GARCCGGGCAGGA
---CTTGGCAA--
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GARCCGGGCAGGA---
-----GGGCGGGAAGG
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:9
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GARCCGGGCAGGA-----
------NDCAGGAARTNN
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GARCCGGGCAGGA---
------NACAGGAAAT
 A C T G C G T A C T A G A G T C A G T C C T A G A C T G C T A G A G T C C G T A A C T G A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T