Information for 9-GAGCTCACTT (Motif 16)

A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T
Reverse Opposite:
T C G A T G C A A C T G A C G T C T A G C G T A A C T G A G T C A G C T A T G C
p-value:1e-9
log p-value:-2.172e+01
Information Content per bp:1.846
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif128.8
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets34.2 +/- 28.7bp
Average Position of motif in Background48.3 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GAGCTCACTT
AAGGTCAC--
 A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGCTCACTT
AGRGGTCA---
 A C G T A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGCTCACTT
TRAGGTCA---
 A C G T A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GAGCTCACTT-
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGCTCACTT-
NNACTTACCTN
 A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCTCACTT--
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAGCTCACTT-
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T A C G T A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGCTCACTT---
---ACCACTTGAA
 A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

USF1/MA0093.2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGCTCACTT---
--GGTCACGTGGC
 A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGCTCACTT-
--CCTCACCTG
 A T C G C T G A C T A G T G A C A C G T A G T C G T C A A G T C A C G T A G C T A C G T
A C G T A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G