Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-59 | -1.368e+02 | 0.0000 | 229.0 | 28.17% | 4025.8 | 8.47% | motif file (matrix) |
svg |
2 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-57 | -1.332e+02 | 0.0000 | 151.0 | 18.57% | 1793.7 | 3.77% | motif file (matrix) |
svg |
3 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-57 | -1.324e+02 | 0.0000 | 243.0 | 29.89% | 4609.5 | 9.70% | motif file (matrix) |
svg |
4 |
| E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-49 | -1.146e+02 | 0.0000 | 154.0 | 18.94% | 2171.0 | 4.57% | motif file (matrix) |
svg |
5 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-47 | -1.096e+02 | 0.0000 | 152.0 | 18.70% | 2204.1 | 4.64% | motif file (matrix) |
svg |
6 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-44 | -1.016e+02 | 0.0000 | 168.0 | 20.66% | 2848.8 | 6.00% | motif file (matrix) |
svg |
7 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-40 | -9.249e+01 | 0.0000 | 116.0 | 14.27% | 1509.3 | 3.18% | motif file (matrix) |
svg |
8 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-33 | -7.819e+01 | 0.0000 | 51.0 | 6.27% | 282.2 | 0.59% | motif file (matrix) |
svg |
9 |
| E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-32 | -7.559e+01 | 0.0000 | 86.0 | 10.58% | 1005.1 | 2.12% | motif file (matrix) |
svg |
10 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-31 | -7.206e+01 | 0.0000 | 103.0 | 12.67% | 1511.5 | 3.18% | motif file (matrix) |
svg |
11 |
| E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer | 1e-30 | -7.114e+01 | 0.0000 | 135.0 | 16.61% | 2513.5 | 5.29% | motif file (matrix) |
svg |
12 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-30 | -6.973e+01 | 0.0000 | 107.0 | 13.16% | 1672.6 | 3.52% | motif file (matrix) |
svg |
13 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-28 | -6.653e+01 | 0.0000 | 67.0 | 8.24% | 682.2 | 1.44% | motif file (matrix) |
svg |
14 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-28 | -6.474e+01 | 0.0000 | 91.0 | 11.19% | 1312.1 | 2.76% | motif file (matrix) |
svg |
15 |
| E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-25 | -5.780e+01 | 0.0000 | 51.0 | 6.27% | 442.2 | 0.93% | motif file (matrix) |
svg |
16 |
| E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-25 | -5.763e+01 | 0.0000 | 106.0 | 13.04% | 1915.4 | 4.03% | motif file (matrix) |
svg |
17 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-23 | -5.337e+01 | 0.0000 | 70.0 | 8.61% | 945.2 | 1.99% | motif file (matrix) |
svg |
18 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-20 | -4.649e+01 | 0.0000 | 54.0 | 6.64% | 647.1 | 1.36% | motif file (matrix) |
svg |
19 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-14 | -3.295e+01 | 0.0000 | 84.0 | 10.33% | 1889.7 | 3.98% | motif file (matrix) |
svg |
20 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-13 | -3.032e+01 | 0.0000 | 250.0 | 30.75% | 9390.4 | 19.76% | motif file (matrix) |
svg |
21 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-10 | -2.482e+01 | 0.0000 | 198.0 | 24.35% | 7296.6 | 15.36% | motif file (matrix) |
svg |
22 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-10 | -2.452e+01 | 0.0000 | 86.0 | 10.58% | 2302.4 | 4.85% | motif file (matrix) |
svg |
23 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-8 | -2.067e+01 | 0.0000 | 146.0 | 17.96% | 5155.5 | 10.85% | motif file (matrix) |
svg |
24 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-8 | -2.024e+01 | 0.0000 | 77.0 | 9.47% | 2147.5 | 4.52% | motif file (matrix) |
svg |
25 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-7 | -1.735e+01 | 0.0000 | 63.0 | 7.75% | 1727.2 | 3.63% | motif file (matrix) |
svg |
26 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-7 | -1.683e+01 | 0.0000 | 103.0 | 12.67% | 3469.8 | 7.30% | motif file (matrix) |
svg |
27 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-7 | -1.632e+01 | 0.0000 | 108.0 | 13.28% | 3734.5 | 7.86% | motif file (matrix) |
svg |
28 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-6 | -1.612e+01 | 0.0000 | 206.0 | 25.34% | 8535.6 | 17.96% | motif file (matrix) |
svg |
29 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-6 | -1.447e+01 | 0.0000 | 145.0 | 17.84% | 5652.2 | 11.89% | motif file (matrix) |
svg |
30 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.319e+01 | 0.0000 | 58.0 | 7.13% | 1742.3 | 3.67% | motif file (matrix) |
svg |
31 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-5 | -1.214e+01 | 0.0001 | 40.0 | 4.92% | 1066.1 | 2.24% | motif file (matrix) |
svg |
32 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-4 | -1.131e+01 | 0.0001 | 39.0 | 4.80% | 1066.9 | 2.25% | motif file (matrix) |
svg |
33 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-4 | -1.059e+01 | 0.0003 | 139.0 | 17.10% | 5780.6 | 12.17% | motif file (matrix) |
svg |
34 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-4 | -1.040e+01 | 0.0003 | 12.0 | 1.48% | 161.6 | 0.34% | motif file (matrix) |
svg |
35 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-4 | -9.227e+00 | 0.0010 | 135.0 | 16.61% | 5748.2 | 12.10% | motif file (matrix) |
svg |
36 |
| E-box(bHLH)/Promoter/Homer | 1e-3 | -8.689e+00 | 0.0017 | 14.0 | 1.72% | 255.0 | 0.54% | motif file (matrix) |
svg |
37 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-3 | -8.528e+00 | 0.0019 | 16.0 | 1.97% | 323.9 | 0.68% | motif file (matrix) |
svg |
38 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-3 | -8.486e+00 | 0.0020 | 78.0 | 9.59% | 3005.5 | 6.33% | motif file (matrix) |
svg |
39 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-3 | -7.837e+00 | 0.0037 | 151.0 | 18.57% | 6773.2 | 14.25% | motif file (matrix) |
svg |
40 |
| CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -7.729e+00 | 0.0040 | 5.0 | 0.62% | 36.1 | 0.08% | motif file (matrix) |
svg |
41 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.278e+00 | 0.0061 | 8.0 | 0.98% | 109.0 | 0.23% | motif file (matrix) |
svg |
42 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-3 | -7.142e+00 | 0.0069 | 70.0 | 8.61% | 2758.8 | 5.81% | motif file (matrix) |
svg |
43 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.037e+00 | 0.0074 | 37.0 | 4.55% | 1230.8 | 2.59% | motif file (matrix) |
svg |
44 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -6.959e+00 | 0.0079 | 51.0 | 6.27% | 1872.2 | 3.94% | motif file (matrix) |
svg |
45 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -6.948e+00 | 0.0079 | 51.0 | 6.27% | 1874.0 | 3.94% | motif file (matrix) |
svg |
46 |
| E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-2 | -6.714e+00 | 0.0096 | 11.0 | 1.35% | 210.3 | 0.44% | motif file (matrix) |
svg |
47 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.712e+00 | 0.0096 | 178.0 | 21.89% | 8398.7 | 17.67% | motif file (matrix) |
svg |
48 |
| NFY(CCAAT)/Promoter/Homer | 1e-2 | -6.638e+00 | 0.0099 | 46.0 | 5.66% | 1668.5 | 3.51% | motif file (matrix) |
svg |
49 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.628e+00 | 0.0099 | 50.0 | 6.15% | 1855.9 | 3.91% | motif file (matrix) |
svg |
50 |
| Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.385e+00 | 0.0123 | 84.0 | 10.33% | 3538.9 | 7.45% | motif file (matrix) |
svg |
51 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-2 | -5.645e+00 | 0.0252 | 57.0 | 7.01% | 2289.8 | 4.82% | motif file (matrix) |
svg |
52 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -5.513e+00 | 0.0282 | 64.0 | 7.87% | 2649.2 | 5.58% | motif file (matrix) |
svg |
53 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-2 | -5.495e+00 | 0.0282 | 57.0 | 7.01% | 2306.4 | 4.85% | motif file (matrix) |
svg |
54 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -5.459e+00 | 0.0287 | 23.0 | 2.83% | 726.6 | 1.53% | motif file (matrix) |
svg |
55 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-2 | -5.369e+00 | 0.0308 | 82.0 | 10.09% | 3575.7 | 7.52% | motif file (matrix) |
svg |
56 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -4.983e+00 | 0.0445 | 87.0 | 10.70% | 3890.9 | 8.19% | motif file (matrix) |
svg |
57 |
| AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -4.671e+00 | 0.0598 | 198.0 | 24.35% | 9926.2 | 20.89% | motif file (matrix) |
svg |
58 |
| Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer | 1e-2 | -4.669e+00 | 0.0598 | 38.0 | 4.67% | 1475.0 | 3.10% | motif file (matrix) |
svg |
59 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-2 | -4.613e+00 | 0.0612 | 62.0 | 7.63% | 2665.8 | 5.61% | motif file (matrix) |
svg |