Information for 9-CACTAATTAG (Motif 14)

A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G
Reverse Opposite:
G T A C A G C T T C G A T C G A A C G T A C G T T C G A T C A G G A C T T A C G
p-value:1e-7
log p-value:-1.779e+01
Information Content per bp:1.667
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.95%
Number of Background Sequences with motif349.9
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets62.4 +/- 26.4bp
Average Position of motif in Background51.4 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0027.1_Emx2/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---CACTAATTAG----
NNCCACTAATTAGNNNT
 A C G T A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T A C G T
T C A G C A G T A T G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G A T C G C G A T

PH0034.1_Gbx2/Jaspar

Match Rank:2
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---CACTAATTAG----
AANCGCTAATTAGCNNN
 A C G T A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T A C G T
G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T

PH0033.1_Gbx1/Jaspar

Match Rank:3
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--CACTAATTAG-----
TNCACTAATTAGTNNNN
 A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T A C G T A C G T
C G A T T G C A T G A C T G C A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A G C T A C T G T A C G G A T C C G T A

PH0039.1_Mnx1/Jaspar

Match Rank:4
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CACTAATTAG---
NNNCACTAATTANTNN
 A C G T A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

PH0031.1_Evx1/Jaspar

Match Rank:5
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CACTAATTAG----
NNNCACTAATTAGTNNT
 A C G T A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T A C G T
A C T G G C A T A T G C T A G C T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T C A G T A G T C C G A T

PH0092.1_Lhx2/Jaspar

Match Rank:6
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CACTAATTAG-----
TAAACTAATTAGTGAAC
 A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T A C G T A C G T
C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

PH0155.1_Prrx2/Jaspar

Match Rank:7
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---CACTAATTAG----
NTTCGCTAATTAGCTNT
 A C G T A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T A C G T
G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T

PH0135.1_Phox2a/Jaspar

Match Rank:8
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---CACTAATTAG---
CAGCATTAATTAGTAG
 A C G T A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T
A G T C T C G A A C T G G T A C T C G A G A C T A G C T C G T A C T G A C G A T A C G T C T G A C T A G A G C T T C A G T A C G

LHX6/MA0658.1/Jaspar

Match Rank:9
Score:0.84
Offset:1
Orientation:forward strand
Alignment:CACTAATTAG-
-ACTAATTAGC
 A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T
A C G T T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--CACTAATTAG----
ACNNCTAATTAGNNNN
 A C G T A C G T A T G C C T G A A G T C A G C T T G C A T G C A A G C T A G C T C T G A C A T G A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T