Information for 3-CTYSTGGCTGCCTCCC (Motif 3)

A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C
Reverse Opposite:
A C T G A T C G T A C G C G T A C T A G C T A G A T G C C G T A A C T G A T G C G A T C G T C A A T G C T C A G C T G A A C T G
p-value:1e-9
log p-value:-2.265e+01
Information Content per bp:1.699
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif50.6
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets43.0 +/- 25.1bp
Average Position of motif in Background54.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTYSTGGCTGCCTCCC--
----TGGCAGNCTGCCAG
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTYSTGGCTGCCTCCC-
CAKCTGKYCYYTTYCCC
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C A C G T
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CTYSTGGCTGCCTCCC
-----NGCTN------
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTYSTGGCTGCCTCCC--
--CTTGGCANNNTGCCAA
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C A C G T A C G T
A C G T A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CTYSTGGCTGCCTCCC
------GCTCCG----
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CTYSTGGCTGCCTCCC
------GCTTCC----
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:7
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CTYSTGGCTGCCTCCC
------GGTCCCGCCC
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CTYSTGGCTGCCTCCC
------GCTGTG----
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CTYSTGGCTGCCTCCC
--CGCAGCTGCG----
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C
A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CTYSTGGCTGCCTCCC--
----TGGCACCATGCCAA
 A G T C G A C T A G T C T A C G A C G T C T A G A T C G A G T C C G A T A T C G A G T C G A T C A C G T A T G C A T G C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A