Information for 9-CMTTTGTCAT (Motif 8)

T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T
Reverse Opposite:
G C T A A C G T C T A G G C T A T A G C C G T A T C G A G T C A A C G T A C T G
p-value:1e-10
log p-value:-2.392e+01
Information Content per bp:1.714
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.36%
Number of Background Sequences with motif533.7
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets52.5 +/- 28.9bp
Average Position of motif in Background47.4 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CMTTTGTCAT-
---YTGWCADY
 T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T A C G T
A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

MEIS1/MA0498.2/Jaspar

Match Rank:2
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:CMTTTGTCAT
---NTGTCAN
 T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T
A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CMTTTGTCAT--
----TGTCANYT
 T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CMTTTGTCAT-
-----GTCATN
 T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CMTTTGTCAT----
NCNTTTGTTATTTNN
 A C G T T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CMTTTGTCAT
--CCTGTCAA
 T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CMTTTGTCAT
CCWTTGTY--
 T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CMTTTGTCAT
CCTTTGTTTT
 T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CMTTTGTCAT---
NNAATTAGTCACGGT
 A C G T A C G T T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CMTTTGTCAT
CCTTTGTT--
 T G A C T G C A A C G T A G C T C G A T A T C G C G A T A G T C C G T A C G A T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T