Information for 6-CGTAGCACAG (Motif 5)

A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G
Reverse Opposite:
G T A C A C G T A C T G A C G T A C T G G A T C A C G T T G C A G A T C A C T G
p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.859
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif28.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets47.9 +/- 23.8bp
Average Position of motif in Background53.2 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CGTAGCACAG-
-----CACAGN
 A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGTAGCACAG------
CGAAGCACACAAAATA
 A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGTAGCACAG
CCAGGAACAG
 A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGTAGCACAG-
-AAACCACAGC
 A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGTAGCACAG--
NWAACCACADNN
 A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGTAGCACAG
NAAACCACAG
 A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGTAGCACAG-------
--GAGCACAGCAGGACA
 A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGTAGCACAG--
-AAACCACAGAN
 A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGTAGCACAG--
CCGCATAGCAACGGA
 A C G T A C G T A C G T A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGTAGCACAG--
TACCATAGCAACGGT
 A C G T A C G T A C G T A G T C C T A G A C G T G T C A C A T G A G T C C G T A A G T C C G T A A C T G A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T