Information for 6-GAGCGCCAGC (Motif 4)

A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C
Reverse Opposite:
A C T G T G A C C G A T A T C G A C T G T G A C A T C G A G T C A G C T A T G C
p-value:1e-13
log p-value:-3.128e+01
Information Content per bp:1.833
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif150.0
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets52.1 +/- 27.1bp
Average Position of motif in Background50.1 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GAGCGCCAGC
GAGSCCGAGC
 A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGCGCCAGC
AGCGCGCC---
 A C G T A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGCGCCAGC--
ANCGCGCGCCCTTNN
 A C G T A C G T A C G T A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C A C G T A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGCGCCAGC--
NTCGCGCGCCTTNNN
 A C G T A C G T A C G T A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GAGCGCCAGC--
NNNGGGGCGCCCCCNN
 A C G T A C G T A C G T A C G T A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGCGCCAGC
-CGTGCCAAG
 A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGCCAGC
NTGATTGACAGN
 A C G T A C G T A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGCGCCAGC-
TGAGTGACAGSC
 A C G T A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGCGCCAGC---
-GGCTCYAKCAYC
 A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C A C G T A C G T A C G T
A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAGCGCCAGC
---TGCCAA-
 A T C G T C G A A C T G T A G C A C T G A G T C A T G C C G T A A C T G T G A C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T