Information for 3-YCAGCACCATGGMCAG (Motif 5)

A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
Reverse Opposite:
A G T C A C G T A T C G A C G T A T G C A G T C C T G A C G A T A C T G A C T G C G A T A T C G A G T C A C G T C T A G C T G A
p-value:1e-25
log p-value:-5.862e+01
Information Content per bp:1.807
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 17.6bp
Average Position of motif in Background34.5 +/- 14.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-YCAGCACCATGGMCAG----
TTCAGCACCATGGACAGCGCC
 A C G T A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:YCAGCACCATGGMCAG----
TCAGCACCATGGACAGCTCC
 A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-YCAGCACCATGGMCAG
GTCAGCANNTN------
 A C G T A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----YCAGCACCATGGMCAG
TGAGTCAGCA----------
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--YCAGCACCATGGMCAG
NGTCAGCANTTT------
 A C G T A C G T A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:6
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----YCAGCACCATGGMCAG
CTGAGTCAGCAATTT------
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:YCAGCACCATGGMCAG
-CAGCC----------
 A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:8
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------YCAGCACCATGGMCAG
NCTANGTCAGCAAATTT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T A C G T A C G T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----YCAGCACCATGGMCAG
SCTGTCARCACC--------
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:forward strand
Alignment:YCAGCACCATGGMCAG
------CCAGGAACAG
 A G C T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G C T A G A C T A C T G A T C G G T C A A T G C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G