Information for 25-CTTTCMWGCTTGA (Motif 42)

A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A
Reverse Opposite:
A G C T G T A C G T C A C T G A A T C G T A G C C G T A A C G T T C A G C T G A T C G A C T G A A C T G
p-value:1e-5
log p-value:-1.218e+01
Information Content per bp:1.699
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.8 +/- 25.3bp
Average Position of motif in Background70.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTTTCMWGCTTGA---
--TTCACGCATGAGTT
 A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX9/MA0781.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTTCMWGCTTGA--
TGCAGTCATGCGTGACG
 A C G T A C G T A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTTCMWGCTTGA--
NGCANTCATGCGTGACG
 A C G T A C G T A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTTTCMWGCTTGA---------
--TTTMCGCTTSABTGAACACN
 A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTTTCMWGCTTGA-
SCAGYCADGCATGAC
 A C G T A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTTTCMWGCTTGA--
GCAGCCAAGCGTGACN
 A C G T A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTTTCMWGCTTGA
NYTTCCCGCC---
 A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A
T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CTTTCMWGCTTGA
-----AAGCTTG-
 A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CTTTCMWGCTTGA
TNCCTTTGATCTTN--
 A C G T A C G T A C G T A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A
C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTTTCMWGCTTGA
GCTGTCAA------
 A C G T A G T C A G C T A G C T A G C T A G T C T G C A G C A T A T C G A T G C G A C T C A G T C A T G T C G A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T