Information for 20-CYWGMCGGGT (Motif 39)

A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T
Reverse Opposite:
G T C A A G T C G T A C G T A C A C T G C A G T A G T C C G T A C T A G A C T G
p-value:1e-5
log p-value:-1.332e+01
Information Content per bp:1.815
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif107.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets50.5 +/- 17.2bp
Average Position of motif in Background51.2 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CYWGMCGGGT
CCAGACAG--
 A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CYWGMCGGGT
CCAGACRSVB
 A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CYWGMCGGGT-
GGGGCTYGKCTGGGA
 A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CYWGMCGGGT--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CYWGMCGGGT------
CGCGCCGGGTCACGTA
 A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PH0104.1_Meis2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CYWGMCGGGT----
NTATTGACAGGTNNTN
 A C G T A C G T A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T A C G T A C G T A C G T A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CYWGMCGGGT----
GGATTGACAGGTCNTT
 A C G T A C G T A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T A C G T A C G T A C G T A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CYWGMCGGGT
NNACTTGCCTT--
 A C G T A C G T A C G T A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CYWGMCGGGT---
ACATGCCCGGGCAT
 A C G T A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T A C G T A C G T A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CYWGMCGGGT----
NAGANTGGCGGGGNGNA
 A C G T A C G T A C G T A G T C A G T C C G A T A C T G G T C A A G T C A C T G A C T G A C T G C A G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A