Information for 19-CCGGCTGTCTTGT (Motif 30)

A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C G T C A C G T A A C T G C T G A A G T C C G T A C T A G G T A C A G T C A C T G A T C G
p-value:1e-9
log p-value:-2.190e+01
Information Content per bp:1.861
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.3 +/- 30.4bp
Average Position of motif in Background46.7 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCGGCTGTCTTGT
----CTGTCTGG-
 A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCGGCTGTCTTGT
RCCATMTGTT----
 A C G T A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCGGCTGTCTTGT
GCCATCTGTT----
 A C G T A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCGGCTGTCTTGT----
NNTNNTGTCTGGNNTNG
 A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCGGCTGTCTTGT
--VBSYGTCTGG-
 A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCGGCTGTCTTGT
----NTGTCAN--
 A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCGGCTGTCTTGT
ACCCGGATGTA----
 A C G T A C G T A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCGGCTGTCTTGT
-----TGTCANYT
 A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCGGCTGTCTTGT
ACCATCTGTT----
 A C G T A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCTGTCTTGT
NNGCAGCTGTC----
 A C G T A C G T A T G C A G T C A C T G A C T G A G T C A C G T A C T G A G C T A G T C G C A T A C G T A C T G A C G T
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T