Information for 16-AAAGCAGCAMTRA (Motif 21)

C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A
Reverse Opposite:
A C G T G A C T C G T A A C G T A C G T A C T G A G T C A C G T C T A G A G T C C G A T A C G T A C G T
p-value:1e-11
log p-value:-2.555e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 24.2bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAAGCAGCAMTRA-------
GAAGTANCACGAATNMRAGT
 C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAAGCAGCAMTRA
ATTTACAGTAGCAAAA-
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAAGCAGCAMTRA------
--ACAAGCAATTAATGAAT
 C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAAGCAGCAMTRA------
--ACAAGCAATTAATGAAT
 C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AAAGCAGCAMTRA
ATGTACAGTAGCAAAG-
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T

MAFK/MA0496.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAAGCAGCAMTRA
CTGAGTCAGCAATTT
 A C G T A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

Hmx3/MA0898.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAAGCAGCAMTRA------
--ACAAGCAATTAAAGAAT
 C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAAGCAGCAMTRA------
--ACAAGCAATTAAAGAAT
 C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

SPI1/MA0080.4/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAGCAGCAMTRA
AAAAAGCGGAAGTA-
 A C G T A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A
T C G A C T G A C G T A C G T A C G T A T A C G T G A C C T A G A T C G G T C A C G T A A T C G G A C T C G T A A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AAAGCAGCAMTRA---
NNNNTGAGCACTGTNNG
 A C G T C G T A C G T A C G T A A C T G A G T C C G T A A C T G A G T C C G T A G T C A A C G T C T G A C G T A A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G