Information for 15-RAWGTTGCTAATG (Motif 20)

C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G
Reverse Opposite:
A T G C C G T A C G A T C G A T C T G A A C T G A G T C G T C A C G T A A G T C G C T A C G A T G A T C
p-value:1e-11
log p-value:-2.562e+01
Information Content per bp:1.740
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif23.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.1 +/- 22.8bp
Average Position of motif in Background44.6 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----RAWGTTGCTAATG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:RAWGTTGCTAATG--
NNCGTTGCTATGGNN
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:RAWGTTGCTAATG
-CTGTTGCTAGGS
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:RAWGTTGCTAATG--
NCCGTTGCTANGNGN
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:RAWGTTGCTAATG----
---GTTGCCATGGNAAC
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RAWGTTGCTAATG
NATGTTGCAA---
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:RAWGTTGCTAATG--
---WATGCAAATGAG
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:RAWGTTGCTAATG-----
--TNNTGCTACTGTNNNN
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:RAWGTTGCTAATG
---GGTGCCAAGT
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RAWGTTGCTAATG--
---TATGCWAATBAV
 C T A G G C T A C G A T C T A G C G A T A C G T A C T G A G T C A G C T C G T A C G T A C G A T A T C G A C G T A C G T
A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G