Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 823)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48482)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-237	-5.478e+02	0.0000	190.0	23.09%	271.5	0.56%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-188	-4.337e+02	0.0000	189.0	22.96%	493.5	1.02%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-22	-5.154e+01	0.0000	17.0	2.07%	21.9	0.05%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-19	-4.595e+01	0.0000	59.0	7.17%	788.6	1.63%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-17	-3.922e+01	0.0000	67.0	8.14%	1151.9	2.37%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-16	-3.727e+01	0.0000	45.0	5.47%	569.9	1.18%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-14	-3.336e+01	0.0000	23.0	2.79%	147.0	0.30%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-13	-3.128e+01	0.0000	38.0	4.62%	487.5	1.01%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-7	-1.819e+01	0.0000	100.0	12.15%	3267.4	6.74%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-6	-1.540e+01	0.0000	65.0	7.90%	1925.2	3.97%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-6	-1.538e+01	0.0000	15.0	1.82%	162.6	0.34%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-5	-1.316e+01	0.0001	85.0	10.33%	2950.2	6.08%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-5	-1.311e+01	0.0001	91.0	11.06%	3230.6	6.66%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-5	-1.233e+01	0.0001	55.0	6.68%	1680.7	3.47%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-5	-1.232e+01	0.0001	46.0	5.59%	1306.7	2.69%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-5	-1.199e+01	0.0001	29.0	3.52%	665.7	1.37%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.188e+01	0.0001	6.0	0.73%	26.4	0.05%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-5	-1.159e+01	0.0002	24.0	2.92%	503.3	1.04%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-4	-1.059e+01	0.0005	24.0	2.92%	536.2	1.11%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-4	-1.055e+01	0.0005	19.0	2.31%	367.4	0.76%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-4	-1.046e+01	0.0005	50.0	6.08%	1580.8	3.26%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-1.043e+01	0.0005	32.0	3.89%	840.5	1.73%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-4	-1.015e+01	0.0006	50.0	6.08%	1600.9	3.30%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-9.960e+00	0.0007	35.0	4.25%	981.7	2.02%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-4	-9.825e+00	0.0008	17.0	2.07%	322.1	0.66%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-9.671e+00	0.0009	189.0	22.96%	8556.1	17.64%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-4	-9.641e+00	0.0009	8.0	0.97%	77.4	0.16%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-4	-9.563e+00	0.0009	24.0	2.92%	573.8	1.18%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-4	-9.396e+00	0.0010	106.0	12.88%	4306.3	8.88%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-3	-8.943e+00	0.0016	49.0	5.95%	1639.0	3.38%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-3	-8.863e+00	0.0017	47.0	5.71%	1555.1	3.21%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-3	-8.841e+00	0.0017	50.0	6.08%	1690.2	3.48%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-8.836e+00	0.0017	55.0	6.68%	1916.8	3.95%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-8.681e+00	0.0018	20.0	2.43%	460.0	0.95%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-3	-8.614e+00	0.0019	28.0	3.40%	767.7	1.58%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-8.446e+00	0.0022	18.0	2.19%	397.9	0.82%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-8.346e+00	0.0023	19.0	2.31%	436.9	0.90%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-3	-8.289e+00	0.0024	30.0	3.65%	864.8	1.78%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-8.237e+00	0.0025	80.0	9.72%	3152.8	6.50%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-8.044e+00	0.0029	72.0	8.75%	2784.5	5.74%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-7.993e+00	0.0030	17.0	2.07%	377.2	0.78%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-7.867e+00	0.0033	52.0	6.32%	1856.3	3.83%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-7.773e+00	0.0036	37.0	4.50%	1190.1	2.45%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-3	-7.743e+00	0.0036	77.0	9.36%	3058.4	6.31%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-7.546e+00	0.0043	29.0	3.52%	863.5	1.78%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-3	-7.439e+00	0.0047	18.0	2.19%	433.4	0.89%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-7.112e+00	0.0063	32.0	3.89%	1016.2	2.10%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-6.892e+00	0.0077	24.0	2.92%	692.3	1.43%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-6.783e+00	0.0084	50.0	6.08%	1856.7	3.83%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-6.563e+00	0.0103	166.0	20.17%	7844.1	16.17%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-6.452e+00	0.0113	59.0	7.17%	2318.4	4.78%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-6.287e+00	0.0130	50.0	6.08%	1902.3	3.92%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-6.184e+00	0.0142	33.0	4.01%	1123.9	2.32%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.172e+00	0.0142	44.0	5.35%	1629.9	3.36%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-6.075e+00	0.0152	42.0	5.10%	1544.6	3.18%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.984e+00	0.0164	44.0	5.35%	1646.4	3.39%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-5.978e+00	0.0164	12.0	1.46%	268.8	0.55%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-5.922e+00	0.0168	40.0	4.86%	1464.4	3.02%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-2	-5.731e+00	0.0200	7.0	0.85%	112.0	0.23%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-5.589e+00	0.0227	57.0	6.93%	2314.8	4.77%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-5.485e+00	0.0248	37.0	4.50%	1362.3	2.81%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-5.381e+00	0.0270	60.0	7.29%	2487.2	5.13%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.260e+00	0.0300	10.0	1.22%	222.0	0.46%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.161e+00	0.0326	291.0	35.36%	15121.3	31.18%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-5.101e+00	0.0341	4.0	0.49%	42.8	0.09%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-4.979e+00	0.0379	95.0	11.54%	4341.6	8.95%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-4.749e+00	0.0470	13.0	1.58%	354.5	0.73%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-2	-4.680e+00	0.0497	42.0	5.10%	1679.6	3.46%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-4.638e+00	0.0511	36.0	4.37%	1393.9	2.87%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-4.563e+00	0.0543	56.0	6.80%	2389.9	4.93%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-4.526e+00	0.0555	97.0	11.79%	4525.8	9.33%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-4.522e+00	0.0555	91.0	11.06%	4208.3	8.68%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-4.460e+00	0.0577	41.0	4.98%	1654.2	3.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-4.296e+00	0.0670	29.0	3.52%	1092.2	2.25%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-4.192e+00	0.0733	27.0	3.28%	1007.6	2.08%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-4.177e+00	0.0735	19.0	2.31%	641.7	1.32%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-4.125e+00	0.0764	39.0	4.74%	1593.1	3.28%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-4.047e+00	0.0816	108.0	13.12%	5206.9	10.74%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.993e+00	0.0850	27.0	3.28%	1025.0	2.11%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-1	-3.894e+00	0.0927	100.0	12.15%	4806.3	9.91%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.711e+00	0.1099	15.0	1.82%	495.6	1.02%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.587e+00	0.1229	14.0	1.70%	459.8	0.95%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.562e+00	0.1244	146.0	17.74%	7399.3	15.26%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.501e+00	0.1307	71.0	8.63%	3331.7	6.87%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.492e+00	0.1307	169.0	20.53%	8699.7	17.94%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.489e+00	0.1307	31.0	3.77%	1270.1	2.62%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-3.407e+00	0.1387	76.0	9.23%	3615.8	7.46%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.394e+00	0.1388	3.0	0.36%	41.9	0.09%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.315e+00	0.1486	129.0	15.67%	6522.2	13.45%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.242e+00	0.1581	37.0	4.50%	1601.3	3.30%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.157e+00	0.1702	24.0	2.92%	962.0	1.98%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.078e+00	0.1822	70.0	8.51%	3358.0	6.92%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-3.041e+00	0.1871	83.0	10.09%	4067.6	8.39%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.036e+00	0.1871	19.0	2.31%	732.1	1.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-3.013e+00	0.1883	39.0	4.74%	1735.5	3.58%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.954e+00	0.1977	17.0	2.07%	644.9	1.33%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.781e+00	0.2326	7.0	0.85%	204.1	0.42%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.749e+00	0.2378	8.0	0.97%	248.2	0.51%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-2.687e+00	0.2503	41.0	4.98%	1889.7	3.90%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.642e+00	0.2592	42.0	5.10%	1949.9	4.02%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.637e+00	0.2592	29.0	3.52%	1274.7	2.63%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.625e+00	0.2592	14.0	1.70%	530.6	1.09%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-2.597e+00	0.2634	32.0	3.89%	1434.3	2.96%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.554e+00	0.2723	28.0	3.40%	1234.3	2.54%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.529e+00	0.2764	16.0	1.94%	635.8	1.31%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.524e+00	0.2764	15.0	1.82%	587.7	1.21%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.477e+00	0.2858	20.0	2.43%	839.0	1.73%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.455e+00	0.2893	7.0	0.85%	221.5	0.46%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.434e+00	0.2929	46.0	5.59%	2198.8	4.53%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.411e+00	0.2970	98.0	11.91%	5047.6	10.41%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.403e+00	0.2970	5.0	0.61%	139.9	0.29%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.398e+00	0.2970	6.0	0.73%	181.9	0.38%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.350e+00	0.3071	7.0	0.85%	227.5	0.47%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-2.317e+00	0.3147	100.0	12.15%	5185.3	10.69%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.316e+00	0.3147	62.0	7.53%	3087.6	6.37%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.309e+00	0.3147	83.0	10.09%	4243.6	8.75%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.300e+00	0.3147	4.0	0.49%	103.5	0.21%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.287e+00	0.3147	53.0	6.44%	2604.5	5.37%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.255e+00	0.3207	183.0	22.24%	9897.8	20.41%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.230e+00	0.3261	72.0	8.75%	3656.3	7.54%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.205e+00	0.3317	51.0	6.20%	2513.5	5.18%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.191e+00	0.3334	10.0	1.22%	376.9	0.78%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.190e+00	0.3334	31.0	3.77%	1444.5	2.98%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.189e+00	0.3334	1.0	0.12%	7.7	0.02%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.183e+00	0.3334	105.0	12.76%	5505.9	11.35%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.149e+00	0.3369	30.0	3.65%	1398.1	2.88%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.111e+00	0.3471	168.0	20.41%	9097.7	18.76%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-2.097e+00	0.3493	81.0	9.84%	4190.2	8.64%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.088e+00	0.3498	31.0	3.77%	1462.0	3.01%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.078e+00	0.3504	3.0	0.36%	72.3	0.15%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.018e+00	0.3695	7.0	0.85%	248.5	0.51%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.973e+00	0.3833	12.0	1.46%	493.3	1.02%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.957e+00	0.3867	71.0	8.63%	3673.8	7.57%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.946e+00	0.3879	94.0	11.42%	4963.0	10.23%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.866e+00	0.4174	43.0	5.22%	2151.7	4.44%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.841e+00	0.4246	36.0	4.37%	1775.4	3.66%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.838e+00	0.4246	25.0	3.04%	1184.1	2.44%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.831e+00	0.4246	3.0	0.36%	81.5	0.17%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.821e+00	0.4246	4.0	0.49%	124.7	0.26%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.806e+00	0.4272	3.0	0.36%	82.2	0.17%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.798e+00	0.4274	26.0	3.16%	1244.1	2.57%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.785e+00	0.4300	10.0	1.22%	412.3	0.85%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.780e+00	0.4300	35.0	4.25%	1733.5	3.57%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.778e+00	0.4300	9.0	1.09%	363.2	0.75%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.764e+00	0.4301	12.0	1.46%	515.2	1.06%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.739e+00	0.4381	13.0	1.58%	569.2	1.17%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.692e+00	0.4561	6.0	0.73%	224.3	0.46%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.683e+00	0.4570	20.0	2.43%	943.3	1.94%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.670e+00	0.4601	75.0	9.11%	3982.3	8.21%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.655e+00	0.4636	37.0	4.50%	1869.7	3.86%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.653e+00	0.4636	24.0	2.92%	1162.4	2.40%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.651e+00	0.4636	6.0	0.73%	227.8	0.47%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.648e+00	0.4636	13.0	1.58%	580.9	1.20%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.621e+00	0.4671	9.0	1.09%	378.0	0.78%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.611e+00	0.4688	19.0	2.31%	901.9	1.86%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.584e+00	0.4787	13.0	1.58%	589.0	1.21%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.549e+00	0.4928	67.0	8.14%	3570.9	7.36%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.543e+00	0.4928	9.0	1.09%	386.2	0.80%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.534e+00	0.4937	32.0	3.89%	1621.4	3.34%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.494e+00	0.5107	20.0	2.43%	974.2	2.01%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.466e+00	0.5187	17.0	2.07%	817.7	1.69%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.466e+00	0.5187	17.0	2.07%	817.8	1.69%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.460e+00	0.5187	30.0	3.65%	1527.6	3.15%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.447e+00	0.5222	19.0	2.31%	928.6	1.91%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.435e+00	0.5256	7.0	0.85%	295.2	0.61%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.428e+00	0.5257	77.0	9.36%	4177.6	8.61%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.419e+00	0.5273	12.0	1.46%	557.2	1.15%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.412e+00	0.5280	25.0	3.04%	1262.3	2.60%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.410e+00	0.5280	49.0	5.95%	2599.6	5.36%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.386e+00	0.5353	52.0	6.32%	2775.0	5.72%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.384e+00	0.5353	1.0	0.12%	17.0	0.04%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.375e+00	0.5353	10.0	1.22%	457.6	0.94%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.353e+00	0.5437	7.0	0.85%	303.1	0.62%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.342e+00	0.5466	18.0	2.19%	892.6	1.84%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.336e+00	0.5469	125.0	15.19%	6965.1	14.36%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.321e+00	0.5517	4.0	0.49%	155.0	0.32%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.310e+00	0.5549	14.0	1.70%	680.9	1.40%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.283e+00	0.5668	2.0	0.24%	61.1	0.13%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.280e+00	0.5668	4.0	0.49%	157.2	0.32%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.241e+00	0.5847	4.0	0.49%	160.3	0.33%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.234e+00	0.5857	28.0	3.40%	1469.0	3.03%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.231e+00	0.5857	59.0	7.17%	3223.5	6.65%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.228e+00	0.5857	4.0	0.49%	161.1	0.33%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.218e+00	0.5857	2.0	0.24%	64.1	0.13%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.190e+00	0.5986	17.0	2.07%	865.1	1.78%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.175e+00	0.6041	75.0	9.11%	4161.0	8.58%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.137e+00	0.6242	2.0	0.24%	68.4	0.14%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.135e+00	0.6242	7.0	0.85%	327.5	0.68%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.129e+00	0.6242	1.0	0.12%	23.4	0.05%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.073e+00	0.6553	11.0	1.34%	554.0	1.14%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.063e+00	0.6585	5.0	0.61%	228.1	0.47%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.051e+00	0.6630	66.0	8.02%	3694.2	7.62%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.044e+00	0.6636	8.0	0.97%	393.2	0.81%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.033e+00	0.6680	32.0	3.89%	1748.4	3.60%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.020e+00	0.6730	23.0	2.79%	1239.2	2.56%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.016e+00	0.6730	7.0	0.85%	342.3	0.71%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.016e+00	0.6730	5.0	0.61%	234.0	0.48%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.010e+00	0.6730	48.0	5.83%	2673.3	5.51%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-9.891e-01	0.6803	95.0	11.54%	5402.3	11.14%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-9.807e-01	0.6826	55.0	6.68%	3088.1	6.37%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.645e-01	0.6903	7.0	0.85%	349.1	0.72%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-9.328e-01	0.7090	26.0	3.16%	1434.2	2.96%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-9.253e-01	0.7108	23.0	2.79%	1264.6	2.61%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-9.199e-01	0.7112	17.0	2.07%	922.4	1.90%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-9.091e-01	0.7153	19.0	2.31%	1039.5	2.14%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.031e-01	0.7162	2.0	0.24%	82.7	0.17%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.011e-01	0.7162	3.0	0.36%	136.6	0.28%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.959e-01	0.7162	72.0	8.75%	4112.6	8.48%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.952e-01	0.7162	7.0	0.85%	359.7	0.74%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-8.942e-01	0.7162	6.0	0.73%	303.8	0.63%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.790e-01	0.7163	5.0	0.61%	249.7	0.51%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-8.781e-01	0.7163	27.0	3.28%	1509.0	3.11%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-8.633e-01	0.7208	98.0	11.91%	5646.9	11.64%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-8.486e-01	0.7280	181.0	21.99%	10516.2	21.68%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.408e-01	0.7303	47.0	5.71%	2682.9	5.53%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-8.208e-01	0.7416	2.0	0.24%	88.9	0.18%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-8.147e-01	0.7427	71.0	8.63%	4096.0	8.45%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.080e-01	0.7443	2.0	0.24%	89.2	0.18%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-7.978e-01	0.7485	55.0	6.68%	3168.9	6.53%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-7.887e-01	0.7519	18.0	2.19%	1013.6	2.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.780e-01	0.7565	3.0	0.36%	148.8	0.31%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.770e-01	0.7565	21.0	2.55%	1191.8	2.46%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-7.645e-01	0.7599	10.0	1.22%	554.8	1.14%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.179e-01	0.7926	10.0	1.22%	564.9	1.16%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.075e-01	0.7974	1.0	0.12%	40.1	0.08%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.057e-01	0.7974	13.0	1.58%	743.5	1.53%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-7.016e-01	0.7974	19.0	2.31%	1097.3	2.26%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.937e-01	0.7978	14.0	1.70%	805.6	1.66%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.732e-01	0.8107	19.0	2.31%	1106.2	2.28%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.663e-01	0.8128	26.0	3.16%	1522.3	3.14%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.622e-01	0.8128	11.0	1.34%	636.9	1.31%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-6.442e-01	0.8238	43.0	5.22%	2537.6	5.23%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.384e-01	0.8251	13.0	1.58%	761.5	1.57%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.382e-01	0.8251	34.0	4.13%	2007.3	4.14%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.312e-01	0.8251	2.0	0.24%	105.1	0.22%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.257e-01	0.8251	3.0	0.36%	167.0	0.34%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.237e-01	0.8251	73.0	8.87%	4325.0	8.92%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.222e-01	0.8251	21.0	2.55%	1242.3	2.56%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.107e-01	0.8270	5.0	0.61%	289.2	0.60%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-6.028e-01	0.8300	14.0	1.70%	831.9	1.72%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.895e-01	0.8377	11.0	1.34%	655.4	1.35%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-5.852e-01	0.8378	2.0	0.24%	110.1	0.23%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.803e-01	0.8385	17.0	2.07%	1018.5	2.10%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.725e-01	0.8415	12.0	1.46%	720.3	1.49%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.709e-01	0.8415	58.0	7.05%	3468.4	7.15%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-5.634e-01	0.8423	18.0	2.19%	1084.8	2.24%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-5.617e-01	0.8423	8.0	0.97%	481.6	0.99%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.554e-01	0.8423	68.0	8.26%	4073.2	8.40%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.532e-01	0.8423	15.0	1.82%	907.0	1.87%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.446e-01	0.8446	25.0	3.04%	1512.6	3.12%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-5.427e-01	0.8446	12.0	1.46%	729.3	1.50%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.368e-01	0.8446	5.0	0.61%	303.6	0.63%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.315e-01	0.8456	49.0	5.95%	2956.9	6.10%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.052e-01	0.8647	99.0	12.03%	5957.9	12.28%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.040e-01	0.8647	58.0	7.05%	3512.5	7.24%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-4.980e-01	0.8647	3.0	0.36%	185.6	0.38%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.943e-01	0.8647	79.0	9.60%	4774.4	9.84%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.775e-01	0.8752	111.0	13.49%	6697.1	13.81%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.671e-01	0.8809	5.0	0.61%	318.9	0.66%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-4.668e-01	0.8809	19.0	2.31%	1184.0	2.44%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.555e-01	0.8844	19.0	2.31%	1188.2	2.45%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.538e-01	0.8844	8.0	0.97%	510.6	1.05%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-4.488e-01	0.8844	40.0	4.86%	2468.0	5.09%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-4.458e-01	0.8844	5.0	0.61%	323.9	0.67%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.412e-01	0.8844	4.0	0.49%	260.1	0.54%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.351e-01	0.8857	77.0	9.36%	4704.2	9.70%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-4.233e-01	0.8928	15.0	1.82%	956.8	1.97%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.073e-01	0.9038	63.0	7.65%	3886.0	8.01%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.872e-01	0.9187	3.0	0.36%	206.5	0.43%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.786e-01	0.9232	7.0	0.85%	470.9	0.97%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.759e-01	0.9232	2.0	0.24%	140.3	0.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.708e-01	0.9236	1.0	0.12%	69.1	0.14%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.660e-01	0.9247	5.0	0.61%	344.2	0.71%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.577e-01	0.9290	30.0	3.65%	1917.7	3.95%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.563e-01	0.9290	81.0	9.84%	5020.9	10.35%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.482e-01	0.9311	21.0	2.55%	1366.8	2.82%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.411e-01	0.9343	171.0	20.78%	10438.0	21.52%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.350e-01	0.9367	14.0	1.70%	934.5	1.93%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-3.343e-01	0.9367	44.0	5.35%	2794.8	5.76%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.162e-01	0.9476	33.0	4.01%	2132.9	4.40%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.160e-01	0.9476	2.0	0.24%	152.1	0.31%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.160e-01	0.9476	2.0	0.24%	152.9	0.32%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.913e-01	0.9612	1.0	0.12%	81.1	0.17%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.746e-01	0.9739	6.0	0.73%	442.0	0.91%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.746e-01	0.9739	1.0	0.12%	84.5	0.17%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.740e-01	0.9739	8.0	0.97%	576.8	1.19%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.710e-01	0.9739	36.0	4.37%	2356.5	4.86%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.633e-01	0.9739	13.0	1.58%	909.3	1.87%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.620e-01	0.9739	10.0	1.22%	714.7	1.47%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.618e-01	0.9739	5.0	0.61%	379.3	0.78%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.470e-01	0.9771	5.0	0.61%	385.3	0.79%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.440e-01	0.9771	2.0	0.24%	170.5	0.35%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.385e-01	0.9787	10.0	1.22%	727.5	1.50%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.351e-01	0.9787	10.0	1.22%	729.9	1.50%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.337e-01	0.9787	2.0	0.24%	173.5	0.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.337e-01	0.9787	2.0	0.24%	173.5	0.36%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.218e-01	0.9818	66.0	8.02%	4267.5	8.80%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.150e-01	0.9851	14.0	1.70%	1006.2	2.07%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.145e-01	0.9851	18.0	2.19%	1268.0	2.61%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.129e-01	0.9851	28.0	3.40%	1910.0	3.94%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.055e-01	0.9851	2.0	0.24%	182.6	0.38%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.947e-01	0.9920	45.0	5.47%	3001.4	6.19%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.946e-01	0.9920	1.0	0.12%	102.9	0.21%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.915e-01	0.9920	58.0	7.05%	3816.9	7.87%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.910e-01	0.9920	1.0	0.12%	103.9	0.21%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.829e-01	0.9920	7.0	0.85%	557.3	1.15%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.826e-01	0.9920	6.0	0.73%	487.3	1.00%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.819e-01	0.9920	14.0	1.70%	1032.1	2.13%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.807e-01	0.9920	2.0	0.24%	191.1	0.39%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.776e-01	0.9920	17.0	2.07%	1234.0	2.54%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.707e-01	0.9920	2.0	0.24%	195.9	0.40%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.672e-01	0.9920	20.0	2.43%	1441.3	2.97%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.406e-01	1.0000	14.0	1.70%	1071.5	2.21%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.404e-01	1.0000	18.0	2.19%	1339.9	2.76%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.388e-01	1.0000	5.0	0.61%	443.8	0.92%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.363e-01	1.0000	9.0	1.09%	732.7	1.51%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.359e-01	1.0000	2.0	0.24%	211.3	0.44%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.224e-01	1.0000	20.0	2.43%	1495.6	3.08%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.115e-01	1.0000	14.0	1.70%	1105.9	2.28%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.112e-01	1.0000	4.0	0.49%	389.0	0.80%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.979e-02	1.0000	2.0	0.24%	240.6	0.50%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.479e-02	1.0000	2.0	0.24%	244.1	0.50%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-8.333e-02	1.0000	21.0	2.55%	1626.5	3.35%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.669e-02	1.0000	2.0	0.24%	251.6	0.52%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-7.588e-02	1.0000	11.0	1.34%	947.4	1.95%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-7.299e-02	1.0000	23.0	2.79%	1783.2	3.68%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-6.369e-02	1.0000	18.0	2.19%	1463.0	3.02%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.210e-02	1.0000	11.0	1.34%	972.5	2.01%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-6.135e-02	1.0000	1.0	0.12%	167.0	0.34%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-5.766e-02	1.0000	21.0	2.55%	1685.6	3.48%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.701e-02	1.0000	12.0	1.46%	1055.2	2.18%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.669e-02	1.0000	9.0	1.09%	836.7	1.73%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-5.141e-02	1.0000	12.0	1.46%	1068.2	2.20%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.759e-02	1.0000	4.0	0.49%	462.3	0.95%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.806e-02	1.0000	65.0	7.90%	4672.9	9.63%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.498e-02	1.0000	4.0	0.49%	488.8	1.01%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.445e-02	1.0000	14.0	1.70%	1307.1	2.69%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.319e-02	1.0000	1.0	0.12%	222.3	0.46%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.222e-02	1.0000	47.0	5.71%	3607.1	7.44%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.116e-02	1.0000	3.0	0.36%	438.3	0.90%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.105e-02	1.0000	4.0	0.49%	530.1	1.09%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.064e-02	1.0000	15.0	1.82%	1402.4	2.89%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.054e-02	1.0000	4.0	0.49%	532.1	1.10%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.020e-02	1.0000	1.0	0.12%	230.6	0.48%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.493e-02	1.0000	60.0	7.29%	4547.5	9.38%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.053e-02	1.0000	3.0	0.36%	490.1	1.01%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.016e-02	1.0000	1.0	0.12%	271.0	0.56%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.602e-03	1.0000	9.0	1.09%	1096.6	2.26%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.758e-03	1.0000	85.0	10.33%	6531.7	13.47%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.631e-03	1.0000	4.0	0.49%	693.6	1.43%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.281e-03	1.0000	28.0	3.40%	2718.9	5.61%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.100e-04	1.0000	50.0	6.08%	4506.1	9.29%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	47.3	0.10%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	53.2	0.11%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	37.0	0.08%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	29.4	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	11.4	0.02%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	79.0	0.16%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	17.6	0.04%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	50.5	0.10%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	11.0	0.02%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	5.5	0.01%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	38.0	0.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	5.3	0.01%