Information for 8-CTATTKTTCTCCA (Motif 9)

A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A
Reverse Opposite:
A C G T C A T G A C T G C G T A A C T G C G T A C T G A G T A C C T G A C T G A C G A T C G T A A C T G
p-value:1e-11
log p-value:-2.693e+01
Information Content per bp:1.817
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.5 +/- 28.4bp
Average Position of motif in Background26.1 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0065.1_Sox15_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CTATTKTTCTCCA
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A C G T A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTATTKTTCTCCA
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0073.1_Sox7_1/Jaspar

Match Rank:3
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------CTATTKTTCTCCA--
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTATTKTTCTCCA-
TAATTGTTCTAAAC
 A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0074.1_Sox8_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTATTKTTCTCCA
GTATCTATTGTTCTTTA
 A C G T A C G T A C G T A C G T A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTATTKTTCTCCA
AANTTATTGTTCTNNA
 A C G T A C G T A C G T A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTATTKTTCTCCA
CCATTGTTC----
 A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTATTKTTCTCCA
NCCATTGTTC----
 A C G T A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTATTKTTCTCCA
GCTATTTTTAGC--
 A C G T A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTATTKTTCTCCA-
TTCAATTGTTCTAAAA
 A C G T A C G T A G T C C G A T G C T A A G C T A G C T C A T G A G C T C G A T A G T C A C G T A G T C G A T C C G T A A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A