Information for 2-ASSMTGRACAGCG (Motif 3)

C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G
Reverse Opposite:
G T A C A C T G A G T C A C G T A C T G A C G T A G T C A G T C C T G A C A G T A T C G A T C G A C G T
p-value:1e-13
log p-value:-3.062e+01
Information Content per bp:1.864
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif34.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets56.2 +/- 22.8bp
Average Position of motif in Background54.7 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------ASSMTGRACAGCG--
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ASSMTGRACAGCG--
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C G T A C G T C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ASSMTGRACAGCG----
TCNCTTTACAGCGNNNT
 C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ASSMTGRACAGCG----
TCNNTTTACAGCGNNNT
 C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ASSMTGRACAGCG----
TCNNTTTACAGCGNNNT
 C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:ASSMTGRACAGCG
------CACAGN-
 C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ASSMTGRACAGCG
-CCAGGAACAG--
 C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:ASSMTGRACAGCG
----TTGACAGC-
 C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.58
Offset:8
Orientation:forward strand
Alignment:ASSMTGRACAGCG
--------CAGCC
 C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.56
Offset:6
Orientation:forward strand
Alignment:ASSMTGRACAGCG-
------AACAGCTG
 C G T A A T G C A T G C G T C A A G C T A C T G C T A G C G T A A G T C C G T A A C T G A G T C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G