Information for 6-GCAGGCAGGC (Motif 20)

A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C
Reverse Opposite:
A T C G G T A C A T G C A G C T T A C G A G T C A G T C G A C T A T C G G T A C
p-value:1e-7
log p-value:-1.658e+01
Information Content per bp:1.840
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.42%
Number of Background Sequences with motif807.4
Percentage of Background Sequences with motif1.75%
Average Position of motif in Targets52.7 +/- 28.9bp
Average Position of motif in Background51.2 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGGC-----
SCAGYCADGCATGAC
 A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGGCAGGC--
-AAGGCAAGTGT
 A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C A C G T A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGGCAGGC
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCAGGCAGGC-
---GGCGCGCT
 A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C A C G T
A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCAGGCAGGC
CACAGCAGGGGG--
 A C G T A C G T A C G T A C G T A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCAGGC-----
NGTAGGTTGGCATNNN
 A C G T A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C A C G T A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGCAGGC
SDGCAGGTGCNS
 A C G T A C G T A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

SP2/MA0516.1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCAGGCAGGC-
GGGNGGGGGCGGGGC
 A C G T A C G T A C G T A C G T A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C A C G T
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------GCAGGCAGGC
AAGGKGRCGCAGGCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAGGC
CCAGACRSVB
 A C T G A T G C C T G A A C T G A C T G A T G C T C G A T A C G A C T G A T G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C