Information for 1-KCAGCCAGCA (Motif 2)

A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
Reverse Opposite:
A G C T A C T G T G A C A G C T A C T G A C T G A G T C A C G T A C T G T G A C
p-value:1e-11
log p-value:-2.690e+01
Information Content per bp:1.730
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif8.08%
Number of Background Sequences with motif1539.4
Percentage of Background Sequences with motif3.25%
Average Position of motif in Targets48.6 +/- 27.1bp
Average Position of motif in Background49.6 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:KCAGCCAGCA
-CAGCC----
 A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:KCAGCCAGCA
BCAGACWA--
 A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:KCAGCCAGCA
--TGCCAA--
 A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:KCAGCCAGCA
CCAGACAG--
 A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:KCAGCCAGCA
CGTGCCAAG-
 A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KCAGCCAGCA
-CTGCCCGCA
 A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----KCAGCCAGCA--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:KCAGCCAGCA
TGAGTCAGCA
 A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:KCAGCCAGCA
CCAGACRSVB
 A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-KCAGCCAGCA
ATAATCCC---
 A C G T A C T G T G A C C G T A C T A G A G T C G T A C C T G A A C T G T G A C C T G A
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T