Information for 6-GCCTCATATG (Motif 13)

A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G
Reverse Opposite:
A G T C C T G A C G A T G T C A A G C T T A C G C G T A A C T G A C T G A G T C
p-value:1e-8
log p-value:-2.017e+01
Information Content per bp:1.856
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif24.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets48.4 +/- 24.4bp
Average Position of motif in Background49.5 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCCTCATATG-
TNCCATATATGG
 A C G T A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

Bhlha15/MA0607.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCCTCATATG-
---ACATATGG
 A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T
A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G

SRF/MA0083.3/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCTCATATG----
TGNCCATATATGGTCA
 A C G T A C G T A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T A C G T A C G T A C G T
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

Twist2/MA0633.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCCTCATATG--
--NACATATGGN
 A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T A C G T
A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

PB0078.1_Srf_1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCTCATATG---
TNCCATATATGGNA
 A C G T A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T A C G T A C G T
C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

Atoh1/MA0461.2/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCCTCATATG--
--AACATATGTT
 A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T A C G T
A C G T A C G T T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

Neurog1/MA0623.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCTCATATG--
--ACCATATGGT
 A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T A C G T
A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T

NEUROD2/MA0668.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCCTCATATG--
--GCCATATGGT
 A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T A C G T
A C G T A C G T T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T

BHLHE22/MA0818.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCCTCATATG--
--ACCATATGTT
 A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T A C G T
A C G T A C G T T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCTCATATG---
TGWCCTCARNTGACC
 A C G T A C G T A C T G A G T C A G T C C G A T A G T C T C G A A C G T G C T A A G C T A C T G A C G T A C G T A C G T
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C