Information for 3-TGTTTCAGGGCCA (Motif 11)

A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A G T C A G T C C G A T A C T G G T C A C G T A T C G A A T G C C T G A
p-value:1e-9
log p-value:-2.163e+01
Information Content per bp:1.905
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif38.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets50.5 +/- 26.3bp
Average Position of motif in Background54.8 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGTTTCAGGGCCA
---NTCAAGGTCA
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGTTTCAGGGCCA
---BTCAAGGTCA
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TGTTTCAGGGCCA--
-----CAAGGHCANV
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGTTTCAGGGCCA--
AAGTTCAAGGTCAGC
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGTTTCAGGGCCA-
---TTCAAGGTCAT
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A A C G T
A C G T A C G T A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGTTTCAGGGCCA--
KGTTGCTAGGMAACA
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGTTTCAGGGCCA
TGGTTTCAGT----
 A C G T A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGTTTCAGGGCCA
--WDNCTGGGCA-
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A
A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGTTTCAGGGCCA
----TNNGGGCAG
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A
A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGTTTCAGGGCCA
TGATTTATGGCC-
 A G C T A T C G A G C T A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C G T A C C G T A
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T