Information for 13-GCCATTAATDGAACAC (Motif 16)

A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
Reverse Opposite:
A C T G A C G T A C T G A G C T G C A T G T A C G A C T C G T A A C G T A C G T C T G A C G T A A G C T A C T G A C T G A G T C
p-value:1e-8
log p-value:-2.032e+01
Information Content per bp:1.818
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.2 +/- 20.4bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0063.1_Hoxb8/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCCATTAATDGAACAC
ACCGGCAATTAATAAA----
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A A C G T A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCATTAATDGAACAC
ACAAGCAATTAATGAAT---
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T A C G T A C G T A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCATTAATDGAACAC
ACAAGCAATTAATGAAT---
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T A C G T A C G T A C G T

Hoxd8/MA0910.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCCATTAATDGAACAC
NAGCCATTAATTANTTA-
 A C G T A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A A C G T

PH0080.1_Hoxd8/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCCATTAATDGAACAC
NAGCCATTAATTANTTA-
 A C G T A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCCATTAATDGAACAC
GGCCATTAAC-------
 A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCCATTAATDGAACAC
GGAGGTCATTAATTAT----
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCCATTAATDGAACAC
ACAAGCAATTAAAGAAT---
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T A C G T A C G T A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCCATTAATDGAACAC
ACAAGCAATTAAAGAAT---
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCATTAATDGAACAC
BCMATTAG--------
 A C T G A G T C G T A C C T G A A C G T A G C T G T C A C G T A A C G T C A G T A C T G C G T A C T G A G T A C C G T A G T A C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T