Information for 14-CCACTTAGGC (Motif 36)

A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.457e+01
Information Content per bp:1.960
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.3 +/- 34.1bp
Average Position of motif in Background61.5 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-1/MA0124.2/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CCACTTAGGC
ACCACTTAA--
 A C G T A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CCACTTAGGC
ACCACTTAA--
 A C G T A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----CCACTTAGGC--
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CCACTTAGGC--
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

ISL2/MA0914.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCACTTAGGC
GCACTTAA--
 A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCACTTAGGC
ACCACTTGAA-
 A C G T A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCACTTAGGC
MRSCACTYAA--
 A C G T A C G T A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCACTTAGGC
BCMATTAG--
 A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCACTTAGGC--
TAAGCCACTTAACATT
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCACTTAGGC--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A A G T C A C G T A C G T C G T A A C T G A C T G A G T C A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T