Information for 7-CCGCCTGGCTGAG (Motif 8)

A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G
Reverse Opposite:
A G T C A G C T A G T C C G T A A C T G A G T C G T A C T C G A A C T G A C T G A G T C C A T G A C T G
p-value:1e-9
log p-value:-2.193e+01
Information Content per bp:1.898
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.3 +/- 16.2bp
Average Position of motif in Background56.0 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCGCCTGGCTGAG-
----CCTGCTGAGH
 A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCGCCTGGCTGAG
GTCATGCHTGRCTGS-
 A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCGCCTGGCTGAG
-CCCCCTGCTGTG
 A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCGCCTGGCTGAG-
GGCCYCCTGCTGDGH
 A C G T A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCGCCTGGCTGAG
NGTCACGCTTGGCTGC-
 A C G T A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCGCCTGGCTGAG---
-TCNCCTGCTGNGNNN
 A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCGCCTGGCTGAG-
GGGGCTYGKCTGGGA
 A C G T A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCGCCTGGCTGAG---
-TNTCCTGCTGTGNNG
 A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCGCCTGGCTGAG---
-NNTCCTGCTGTGNNN
 A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CCGCCTGGCTGAG
------NGCTN--
 A G T C G T A C A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T