Information for 3-CGGGGAGCTGTCC (Motif 3)

G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A T G C C G T A A C T G A G T C A C G T A G T C A G T C A G T C A G T C C T A G
p-value:1e-22
log p-value:-5.109e+01
Information Content per bp:1.893
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 15.3bp
Average Position of motif in Background57.7 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGGGGAGCTGTCC
--CGGAGC-----
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGGGGAGCTGTCC----------
---GGAGCTGTCCATGGTGCTGA
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGGGGAGCTGTCC-----
-NNNCAGCTGTCAATATN
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0140.1_Pknox1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGGGGAGCTGTCC----
-AAAGACCTGTCAATCC
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGGGGAGCTGTCC
-NNGCAGCTGTC-
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T

Myod1/MA0499.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGGGGAGCTGTCC--
--TGCAGCTGTCCCT
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

REST/MA0138.2/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CGGGGAGCTGTCC-----------
---GGCGCTGTCCATGGTGCTGAA
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGGGGAGCTGTCC
-NNGCAGCTGTT-
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGGGGAGCTGTCC----
-AACGAGCTGTCAATAC
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGGGGAGCTGTCC
TGGGGA-------
 G A T C A C T G A C T G A C T G A C T G G T C A A C T G A G T C A C G T A T C G A C G T A G T C A G T C
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T