Information for 3-GTTTTGACTGGTT (Motif 3)

T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T
Reverse Opposite:
T G C A C T G A T A G C G T A C C T G A C T A G A G C T G T A C T G C A T C G A T G C A T G C A A G T C
p-value:1e-38
log p-value:-8.883e+01
Information Content per bp:1.547
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif11.70%
Number of Background Sequences with motif1157.4
Percentage of Background Sequences with motif2.50%
Average Position of motif in Targets54.2 +/- 23.2bp
Average Position of motif in Background49.9 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GTTTTGACTGGTT--
AACCGGTTNNAACCGGTTTN
 A C G T A C G T A C G T A C G T A C G T T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T A C G T
C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T C T A G C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T A C T G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GTTTTGACTGGTT---
----TGATTGGCTANN
 T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTTTTGACTGGTT---
GGATTGACAGGTCNTT
 T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T A C G T A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0104.1_Meis2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTTTTGACTGGTT---
NTATTGACAGGTNNTN
 T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T A C G T A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTTTTGACTGGTT--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTTTGACTGGTT---
GTATTGACAGGTNNTT
 T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T A C G T A C G T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTTTGACTGGTT---
NTATTGACAGCTNNTT
 T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T A C G T A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTGACTGGTT---
NNTNNTGTCTGGNNTNG
 A C G T T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

TFCP2/MA0145.3/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GTTTTGACTGGTT-
----AAACCGGTTT
 T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GTTTTGACTGGTT-
----GGTCTGGCAT
 T C A G A C G T A C G T A G C T A C G T C A T G T C G A G A T C G A C T C A T G A T C G G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T