Information for 12-CAGAGCCGGCTCTGTG (Motif 19)

A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
Reverse Opposite:
A T G C G C T A G T A C C T G A T C A G C T G A A C T G A T G C A T G C A T C G A C T G A G T C A C G T A G T C A G C T A C T G
p-value:1e-10
log p-value:-2.439e+01
Information Content per bp:1.822
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 19.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGAGCCGGCTCTGTG
---AGGVNCCTTTGT-
 A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A C G T A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGAGCCGGCTCTGTG
CGGAGC----------
 A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CAGAGCCGGCTCTGTG
--CAGCC---------
 A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:4
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CAGAGCCGGCTCTGTG
---ACCCGGATGTA--
 A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A C G T A C G T A C G T C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A A C G T A C G T

TFCP2/MA0145.3/Jaspar

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CAGAGCCGGCTCTGTG
--AAACCGGTTT----
 A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T A C G T A C G T A C G T A C G T

PB0077.1_Spdef_1/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CAGAGCCGGCTCTGTG
GTACATCCGGATTTTT-
 A C G T A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.48
Offset:2
Orientation:forward strand
Alignment:CAGAGCCGGCTCTGTG
--GACCCCCCGCTGTG
 A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

GRHL1/MA0647.1/Jaspar

Match Rank:8
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CAGAGCCGGCTCTGTG
-NAAACCGGTTTT---
 A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A C G T G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGCCGGCTCTGTG
NNCNTGACCCCGCTCT---
 A C G T A C G T A C G T A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.47
Offset:5
Orientation:forward strand
Alignment:CAGAGCCGGCTCTGTG
-----CCTGCTGAGH-
 A G T C C T G A C T A G C G T A A C T G A G T C A T G C A T C G A T C G A G T C A G C T A G T C A G C T A C T G C G A T T A C G
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T