Information for 10-CGHCCAATCVGMA (Motif 11)

A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A
Reverse Opposite:
A G C T A C T G A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G C A G T A G T C T A C G
p-value:1e-14
log p-value:-3.399e+01
Information Content per bp:1.686
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif7.04%
Number of Background Sequences with motif1033.3
Percentage of Background Sequences with motif2.23%
Average Position of motif in Targets50.3 +/- 24.1bp
Average Position of motif in Background46.5 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.89
Offset:1
Orientation:forward strand
Alignment:CGHCCAATCVGMA
-AGCCAATCGG--
 A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CGHCCAATCVGMA
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CGHCCAATCVGMA----
TGGACCAATCAGCACTCT
 A C G T A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--CGHCCAATCVGMA
ACTAGCCAATCA---
 A C G T A C G T A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CGHCCAATCVGMA
---CCAATCAA--
 A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CGHCCAATCVGMA--
ACNNCTAATTAGNNNN
 A C G T A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CGHCCAATCVGMA
---CAAATCACTG
 A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGHCCAATCVGMA
-GAACAATGG---
 A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGHCCAATCVGMA
-TGCCAA------
 A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CGHCCAATCVGMA--
NNTNNACAATGGGANNN
 A C G T A C G T A T G C T C A G G T C A A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G T G A C C T G A A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A