Information for 6-GAGACATAAA (Motif 14)

A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A C G T A C T G A C G T A G T C A C G T G T A C
p-value:1e-9
log p-value:-2.131e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 36.0bp
Average Position of motif in Background39.5 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GAGACATAAA-
AAGCCATAAAA
 A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GAGACATAAA--
--GTCATAAAAN
 A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GAGACATAAA-----
AGAGCCATAAAATTCG
 A C G T A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GAGACATAAA---
-NGYCATAAAWCH
 A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GAGACATAAA-
--GCAATAAAA
 A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGACATAAA--
-GGTAATAAAAA
 A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGACATAAA----
AAAGGTAATAAAATTT
 A C G T A C G T A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGACATAAA----
TAAAGTCGTAAAACGT
 A C G T A C G T A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAGACATAAA------
ACGGCCATAAAATTAAT
 A C G T A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAGACATAAA--
--GTCGTAAAAT
 A C T G C G T A A C T G C G T A A G T C C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T