Information for 4-NRAACAATGG (Motif 4)

T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G
Reverse Opposite:
G A T C G A T C C G T A A C G T A C G T A C T G A C G T A C G T G A T C A C T G
p-value:1e-41
log p-value:-9.563e+01
Information Content per bp:1.688
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif10.22%
Number of Background Sequences with motif712.8
Percentage of Background Sequences with motif1.50%
Average Position of motif in Targets49.0 +/- 20.4bp
Average Position of motif in Background50.7 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:NRAACAATGG
VRAACAATGG
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:2
Score:0.97
Offset:1
Orientation:forward strand
Alignment:NRAACAATGG-
-RAACAATGGN
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G A C G T
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:NRAACAATGG-
-GAACAATGGN
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:NRAACAATGG
-GAACAATGG
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:NRAACAATGG
RNAACAATGG
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:NRAACAATGG
AAAACAATGG
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:NRAACAATGG
--RACAAWGG
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:NRAACAATGG
VRRACAAWGG
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.92
Offset:2
Orientation:reverse strand
Alignment:NRAACAATGG
--AACAAAGG
 T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--NRAACAATGG----
AATGAACAATGGAATT
 A C G T A C G T T G A C C T A G T G C A C G T A T G A C C G T A G T C A C G A T C T A G C T A G A C G T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T