Information for 3-GGTCTGGTTT (Motif 3)

C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T
Reverse Opposite:
T C G A C T G A C T G A T A G C A G T C C G T A A C T G T C G A A T G C G T A C
p-value:1e-50
log p-value:-1.163e+02
Information Content per bp:1.666
Number of Target Sequences with motif316.0
Percentage of Target Sequences with motif38.44%
Number of Background Sequences with motif7819.3
Percentage of Background Sequences with motif16.49%
Average Position of motif in Targets51.0 +/- 22.7bp
Average Position of motif in Background50.0 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGTCTGGTTT
GGTCTGGCAT
 C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----GGTCTGGTTT--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGGTTT
CTGTCTGG---
 A C G T C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---GGTCTGGTTT
VBSYGTCTGG---
 A C G T A C G T A C G T C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGGTTT
TWGTCTGV---
 A C G T C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GGTCTGGTTT------
-GYCTGGYYTNTGTCA
 C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGTCTGGTTT-
GGNGCGNCTGTTNNN
 A C G T A C G T A C G T A C G T C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGTCTGGTTT
--GCTGTG--
 C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGGTTT
AGGCCTAG---
 A C G T C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGTCTGGTTT
AGGCCTNG---
 A C G T C A T G T A C G A G C T A G T C A C G T A C T G A T C G G A C T G A C T A G C T
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T